FormFactorDodecahedron Class Reference

A regular dodecahedron. More...

Inheritance diagram for FormFactorDodecahedron:

Collaboration diagram for FormFactorDodecahedron:

Public Member Functions
	FormFactorDodecahedron (const std::vector< double > P)
	FormFactorDodecahedron (double edge)
void	accept (INodeVisitor *visitor) const final
	Calls the INodeVisitor's visit method. More...
void	assert_platonic () const
	Assertions for Platonic solid. More...
double	bottomZ (const IRotation &rotation) const final
	Returns the z-coordinate of the lowest point in this shape after a given rotation. More...
FormFactorDodecahedron *	clone () const final
	Returns a clone of this ISampleNode object. More...
std::vector< const Material * >	containedMaterials () const
	Returns set of unique materials contained in this ISampleNode. More...
int	copyNumber (const INode *node) const
	Returns copyNumber of child, which takes into account existence of children with same name. More...
ParameterPool *	createParameterTree () const
	Creates new parameter pool, with all local parameters and those of its children. More...
IFormFactor *	createSlicedFormFactor (ZLimits limits, const IRotation &rot, kvector_t translation) const
	Creates a (possibly sliced) form factor with the given rotation and translation. More...
std::string	displayName () const
	Returns display name, composed from the name of node and it's copy number. More...
complex_t	evaluate (const WavevectorInfo &wavevectors) const override
	Returns scattering amplitude for complex wavevectors ki, kf. More...
complex_t	evaluate_centered (cvector_t q) const
complex_t	evaluate_for_q (cvector_t q) const final
	Returns scattering amplitude for complex scattering wavevector q=k_i-k_f. More...
Eigen::Matrix2cd	evaluatePol (const WavevectorInfo &wavevectors) const override
	Returns scattering amplitude for matrix interactions. More...
virtual std::vector< const INode * >	getChildren () const
	Returns a vector of children. More...
double	getEdge () const
const std::string &	getName () const
bool	isMagnetic () const
	Returns true if there is any magnetic material in this ISampleNode. More...
virtual const Material *	material () const
	Returns nullptr, unless overwritten to return a specific material. More...
RealParameter *	parameter (const std::string &name) const
	Returns parameter with given 'name'. More...
ParameterPool *	parameterPool () const
	Returns pointer to the parameter pool. More...
std::string	parametersToString () const
	Returns multiline string representing available parameters. More...
INode *	parent ()
const INode *	parent () const
std::vector< const INode * >	progeny () const
	Returns a vector of all descendants. More...
double	radialExtension () const final
	Returns the (approximate in some cases) radial size of the particle of this form factor's shape. More...
void	registerChild (INode *node)
RealParameter &	registerParameter (const std::string &name, double *parpointer)
void	registerVector (const std::string &base_name, kvector_t *p_vec, const std::string &units="nm")
void	removeParameter (const std::string &name)
void	removeVector (const std::string &base_name)
void	setAmbientMaterial (const Material &) override
	Passes the material in which this particle is embedded. More...
void	setName (const std::string &name)
void	setParameterValue (const std::string &name, double value)
virtual void	setParent (const INode *newParent)
virtual void	setSpecularInfo (std::unique_ptr< const ILayerRTCoefficients >, std::unique_ptr< const ILayerRTCoefficients >)
	Sets reflection/transmission info. More...
void	setVectorValue (const std::string &base_name, kvector_t value)
double	topZ (const IRotation &rotation) const final
	Returns the z-coordinate of the lowest point in this shape after a given rotation. More...
virtual void	transferToCPP ()
	Used for Python overriding of clone (see swig/tweaks.py) More...
virtual std::string	treeToString () const
	Returns multiline string representing tree structure below the node. More...
double	volume () const final
	Returns the total volume of the particle of this form factor's shape. More...

Static Public Member Functions
static std::string	XComponentName (const std::string &base_name)
static std::string	YComponentName (const std::string &base_name)
static std::string	ZComponentName (const std::string &base_name)

Protected Member Functions
bool	canSliceAnalytically (const IRotation &rot) const override
	Default implementation only allows rotations along z-axis. More...
virtual Eigen::Matrix2cd	evaluate_for_q_pol (cvector_t q) const
	Returns scattering amplitude for complex scattering wavevector q=k_i-k_f in case of matrix interactions. More...
void	onChange () final
	Action to be taken in inherited class when a parameter has changed. More...
void	setPolyhedron (const PolyhedralTopology &topology, double z_bottom, const std::vector< kvector_t > &vertices)
	Called by child classes to set faces and other internal variables. More...
virtual IFormFactor *	sliceFormFactor (ZLimits limits, const IRotation &rot, kvector_t translation) const
	Actually slices the form factor or throws an exception. More...

Static Protected Member Functions
static double	BottomZ (const std::vector< kvector_t > &vertices, const IRotation &rotation)
	Calculates the z-coordinate of the lowest vertex after rotation. More...
static SlicingEffects	computeSlicingEffects (ZLimits limits, const kvector_t &position, double height)
	Helper method for slicing. More...
static IFormFactor *	createTransformedFormFactor (const IFormFactor &formfactor, const IRotation &rot, kvector_t translation)
static double	TopZ (const std::vector< kvector_t > &vertices, const IRotation &rotation)
	Calculates the z-coordinate of the highest vertex after rotation. More...

Protected Attributes
const size_t	m_NP
std::vector< double >	m_P
std::unique_ptr< IShape3D >	m_shape3D
	IShape3D object, used to retrieve vertices (which may be approximate in the case of round shapes). More...

Private Attributes
const double &	m_edge
std::string	m_name
const INode *	m_parent {nullptr}
std::unique_ptr< ParameterPool >	m_pool
	parameter pool (kind of pointer-to-implementation) More...
std::unique_ptr< Polyhedron >	pimpl

Static Private Attributes
static const PolyhedralTopology	topology

Detailed Description

A regular dodecahedron.

Definition at line 23 of file FormFactorDodecahedron.h.

Constructor & Destructor Documentation

FormFactorDodecahedron() [1/2]

FormFactorDodecahedron::FormFactorDodecahedron

(

const std::vector< double >

P

)

Definition at line 35 of file FormFactorDodecahedron.cpp.

    : IFormFactorPolyhedron(
        {"Dodecahedron", "regular dodecahedron", {{"Edge", "nm", "edge length", 0, +INF, 0}}}, P)
    , m_edge(m_P[0])
{
    onChange();
}

References INF.

Referenced by clone().

FormFactorDodecahedron() [2/2]

FormFactorDodecahedron::FormFactorDodecahedron

(

double

edge

)

Definition at line 43 of file FormFactorDodecahedron.cpp.

    : FormFactorDodecahedron(std::vector<double>{edge})
{
}

Member Function Documentation

accept()

void FormFactorDodecahedron::accept ( INodeVisitor *  visitor ) const

inlinefinalvirtual

Calls the INodeVisitor's visit method.

Implements INode.

Definition at line 29 of file FormFactorDodecahedron.h.

{ visitor->visit(this); }

assert_platonic()

void IFormFactorPolyhedron::assert_platonic ( ) const

inherited

Assertions for Platonic solid.

Definition at line 77 of file IFormFactorPolyhedron.cpp.

{
    pimpl->assert_platonic();
}

References IFormFactorPolyhedron::pimpl.

Referenced by onChange(), and FormFactorIcosahedron::onChange().

bottomZ()

double IFormFactorPolyhedron::bottomZ ( const IRotation &  rotation ) const

finalvirtualinherited

Returns the z-coordinate of the lowest point in this shape after a given rotation.

Reimplemented from IBornFF.

Definition at line 46 of file IFormFactorPolyhedron.cpp.

{
    return BottomZ(pimpl->vertices(), rotation);
}

References IBornFF::BottomZ(), and IFormFactorPolyhedron::pimpl.

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BottomZ()

double IBornFF::BottomZ ( const std::vector< kvector_t > &  vertices, const IRotation &  rotation  )

staticprotectedinherited

Calculates the z-coordinate of the lowest vertex after rotation.

Definition at line 90 of file IBornFF.cpp.

{
    ASSERT(vertices.size());
    return algo::min_value(
        vertices.begin(), vertices.end(),
        [&](const kvector_t& vertex) -> double { return rotation.transformed(vertex).z(); });
}

References ASSERT, and algo::min_value().

Referenced by IFormFactorPolyhedron::bottomZ(), IFormFactorPrism::bottomZ(), and IBornFF::bottomZ().

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canSliceAnalytically()

bool IBornFF::canSliceAnalytically ( const IRotation &  rot ) const

overrideprotectedvirtualinherited

Default implementation only allows rotations along z-axis.

Reimplemented from IFormFactor.

Definition at line 54 of file IBornFF.cpp.

{
    if (rot.zInvariant())
        return true;
    return false;
}

References IRotation::zInvariant().

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clone()

FormFactorDodecahedron* FormFactorDodecahedron::clone ( ) const

inlinefinalvirtual

Returns a clone of this ISampleNode object.

Implements IBornFF.

Definition at line 28 of file FormFactorDodecahedron.h.

{ return new FormFactorDodecahedron(m_edge); }

References FormFactorDodecahedron(), and m_edge.

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computeSlicingEffects()

SlicingEffects IBornFF::computeSlicingEffects ( ZLimits  limits, const kvector_t &  position, double  height  )

staticprotectedinherited

Helper method for slicing.

Definition at line 66 of file IBornFF.cpp.

{
    kvector_t new_position(position);
    double z_bottom = position.z();
    double z_top = position.z() + height;
    OneSidedLimit lower_limit = limits.lowerLimit();
    OneSidedLimit upper_limit = limits.upperLimit();
    ASSERT(upper_limit.m_limitless || lower_limit.m_limitless
           || lower_limit.m_value <= upper_limit.m_value);
    double dz_top = upper_limit.m_limitless ? -1 : z_top - upper_limit.m_value;
    double dz_bottom = lower_limit.m_limitless ? -1 : lower_limit.m_value - z_bottom;
    ASSERT(dz_top >= 0 || dz_bottom >= 0);
    ASSERT(dz_bottom <= height);
    ASSERT(dz_top <= height);
    if (dz_bottom < 0)
        dz_bottom = 0;
    if (dz_top < 0)
        dz_top = 0;
    if (dz_bottom > 0)
        new_position.setZ(lower_limit.m_value);
    return {new_position, dz_bottom, dz_top};
}

References ASSERT, ZLimits::lowerLimit(), OneSidedLimit::m_limitless, OneSidedLimit::m_value, BasicVector3D< T >::setZ(), ZLimits::upperLimit(), and BasicVector3D< T >::z().

Referenced by FormFactorAnisoPyramid::sliceFormFactor(), FormFactorBox::sliceFormFactor(), FormFactorCone::sliceFormFactor(), FormFactorCone6::sliceFormFactor(), FormFactorCuboctahedron::sliceFormFactor(), FormFactorCylinder::sliceFormFactor(), FormFactorEllipsoidalCylinder::sliceFormFactor(), FormFactorFullSphere::sliceFormFactor(), FormFactorFullSpheroid::sliceFormFactor(), FormFactorLongBoxGauss::sliceFormFactor(), FormFactorLongBoxLorentz::sliceFormFactor(), FormFactorPrism3::sliceFormFactor(), FormFactorPrism6::sliceFormFactor(), FormFactorPyramid::sliceFormFactor(), FormFactorTetrahedron::sliceFormFactor(), FormFactorTruncatedSphere::sliceFormFactor(), and FormFactorTruncatedSpheroid::sliceFormFactor().

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containedMaterials()

std::vector< const Material * > ISampleNode::containedMaterials ( ) const

inherited

Returns set of unique materials contained in this ISampleNode.

Definition at line 26 of file ISampleNode.cpp.

{
    std::vector<const Material*> result;
    if (const Material* p_material = material())
        result.push_back(p_material);
    for (const auto* child : getChildren()) {
        if (const ISampleNode* sample = dynamic_cast<const ISampleNode*>(child)) {
            for (const Material* p_material : sample->containedMaterials())
                result.push_back(p_material);
        }
    }
    return result;
}

References INode::getChildren(), and ISampleNode::material().

Referenced by MultiLayerUtils::ContainsCompatibleMaterials(), SampleToPython::initLabels(), and ISampleNode::isMagnetic().

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copyNumber()

int INode::copyNumber ( const INode *  node ) const

inherited

Returns copyNumber of child, which takes into account existence of children with same name.

Definition at line 94 of file INode.cpp.

{
    if (node->parent() != this)
        return -1;
 
    int result(-1), count(0);
    for (auto child : getChildren()) {
 
        if (child == nullptr)
            throw std::runtime_error("INode::copyNumber() -> Error. Nullptr as child.");
 
        if (child == node)
            result = count;
 
        if (child->getName() == node->getName())
            ++count;
    }
 
    return count > 1 ? result : -1;
}

References INode::getChildren(), IParametricComponent::getName(), and INode::parent().

Referenced by INode::displayName().

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createParameterTree()

ParameterPool * INode::createParameterTree ( ) const

virtualinherited

Creates new parameter pool, with all local parameters and those of its children.

Reimplemented from IParametricComponent.

Definition at line 126 of file INode.cpp.

{
    std::unique_ptr<ParameterPool> result(new ParameterPool);
 
    for (const INode* child : progeny()) {
        const std::string path = NodeUtils::nodePath(child, parent()) + "/";
        child->parameterPool()->copyToExternalPool(path, result.get());
    }
 
    return result.release();
}

References NodeUtils::nodePath(), INode::parent(), and INode::progeny().

Referenced by ISimulation::runSimulation(), DepthProbeSimulation::validateParametrization(), OffSpecularSimulation::validateParametrization(), and SpecularSimulation::validateParametrization().

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createSlicedFormFactor()

IFormFactor * IFormFactor::createSlicedFormFactor ( ZLimits  limits, const IRotation &  rot, kvector_t  translation  ) const

inherited

Creates a (possibly sliced) form factor with the given rotation and translation.

Definition at line 58 of file IFormFactor.cpp.

{
    if (shapeIsContainedInLimits(*this, limits, rot, translation))
        return createTransformedFormFactor(*this, rot, translation);
    if (shapeOutsideLimits(*this, limits, rot, translation))
        return nullptr;
    if (canSliceAnalytically(rot))
        return sliceFormFactor(limits, rot, translation);
    throw std::runtime_error(getName()
                             + "::createSlicedFormFactor error: not supported for "
                               "the given rotation!");
}

References IFormFactor::canSliceAnalytically(), IFormFactor::createTransformedFormFactor(), IParametricComponent::getName(), and IFormFactor::sliceFormFactor().

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createTransformedFormFactor()

IFormFactor * IFormFactor::createTransformedFormFactor ( const IFormFactor &  formfactor, const IRotation &  rot, kvector_t  translation  )

staticprotectedinherited

Definition at line 99 of file IFormFactor.cpp.

{
    std::unique_ptr<IFormFactor> P_fftemp, P_result;
    if (!rot.isIdentity())
        P_fftemp = std::make_unique<FormFactorDecoratorRotation>(formfactor, rot);
    else
        P_fftemp.reset(formfactor.clone());
    if (translation != kvector_t())
        P_result = std::make_unique<FormFactorDecoratorPositionFactor>(*P_fftemp, translation);
    else
        std::swap(P_fftemp, P_result);
    return P_result.release();
}

References IFormFactor::clone(), IRotation::isIdentity(), and swap().

Referenced by IFormFactor::createSlicedFormFactor(), FormFactorAnisoPyramid::sliceFormFactor(), FormFactorBox::sliceFormFactor(), FormFactorCone::sliceFormFactor(), FormFactorCone6::sliceFormFactor(), FormFactorCuboctahedron::sliceFormFactor(), FormFactorCylinder::sliceFormFactor(), FormFactorEllipsoidalCylinder::sliceFormFactor(), FormFactorFullSphere::sliceFormFactor(), FormFactorFullSpheroid::sliceFormFactor(), FormFactorLongBoxGauss::sliceFormFactor(), FormFactorLongBoxLorentz::sliceFormFactor(), FormFactorPrism3::sliceFormFactor(), FormFactorPrism6::sliceFormFactor(), FormFactorPyramid::sliceFormFactor(), FormFactorTetrahedron::sliceFormFactor(), FormFactorTruncatedSphere::sliceFormFactor(), and FormFactorTruncatedSpheroid::sliceFormFactor().

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displayName()

std::string INode::displayName ( ) const

inherited

Returns display name, composed from the name of node and it's copy number.

Definition at line 115 of file INode.cpp.

{
    std::string result = getName();
    if (m_parent) {
        int index = m_parent->copyNumber(this);
        if (index >= 0)
            result = result + std::to_string(index);
    }
    return result;
}

References INode::copyNumber(), IParametricComponent::getName(), and INode::m_parent.

Referenced by NodeUtils::nodePath().

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evaluate()

complex_t IBornFF::evaluate ( const WavevectorInfo &  wavevectors ) const

overridevirtualinherited

Returns scattering amplitude for complex wavevectors ki, kf.

Implements IFormFactor.

Definition at line 30 of file IBornFF.cpp.

{
    return evaluate_for_q(wavevectors.getQ());
}

References IBornFF::evaluate_for_q(), and WavevectorInfo::getQ().

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evaluate_centered()

complex_t IFormFactorPolyhedron::evaluate_centered ( cvector_t  q ) const

inherited

Definition at line 61 of file IFormFactorPolyhedron.cpp.

{
    return pimpl->evaluate_centered(q);
}

References IFormFactorPolyhedron::pimpl.

evaluate_for_q()

complex_t IFormFactorPolyhedron::evaluate_for_q ( cvector_t  q ) const

finalvirtualinherited

Returns scattering amplitude for complex scattering wavevector q=k_i-k_f.

This method is public only for convenience of plotting form factors in Python.

Implements IBornFF.

Definition at line 56 of file IFormFactorPolyhedron.cpp.

{
    return pimpl->evaluate_for_q(q);
}

References IFormFactorPolyhedron::pimpl.

evaluate_for_q_pol()

Eigen::Matrix2cd IBornFF::evaluate_for_q_pol ( cvector_t  q ) const

protectedvirtualinherited

Returns scattering amplitude for complex scattering wavevector q=k_i-k_f in case of matrix interactions.

Default implementation calls evaluate_for_q(q) and multiplies with the unit matrix.

Definition at line 61 of file IBornFF.cpp.

{
    return evaluate_for_q(q) * Eigen::Matrix2cd::Identity();
}

References IBornFF::evaluate_for_q().

Referenced by IBornFF::evaluatePol().

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evaluatePol()

Eigen::Matrix2cd IBornFF::evaluatePol ( const WavevectorInfo &  wavevectors ) const

overridevirtualinherited

Returns scattering amplitude for matrix interactions.

Reimplemented from IFormFactor.

Definition at line 35 of file IBornFF.cpp.

{
    return evaluate_for_q_pol(wavevectors.getQ());
}

References IBornFF::evaluate_for_q_pol(), and WavevectorInfo::getQ().

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getChildren()

std::vector< const INode * > INode::getChildren ( ) const

virtualinherited

Returns a vector of children.

Reimplemented in SampleProvider, IParticle, ParticleLayout, InterferenceFunctionFinite3DLattice, InterferenceFunctionFinite2DLattice, InterferenceFunction3DLattice, InterferenceFunction2DSuperLattice, InterferenceFunction2DParaCrystal, InterferenceFunction2DLattice, InterferenceFunction1DLattice, IDetector, Beam, ParticleDistribution, ParticleCoreShell, ParticleComposition, Particle, MesoCrystal, Crystal, MultiLayer, Layer, InterferenceFunctionRadialParaCrystal, LayerInterface, ConvolutionDetectorResolution, Instrument, and ISimulation.

Definition at line 63 of file INode.cpp.

{
    return {};
}

Referenced by node_progeny::AllDescendantsOfType(), node_progeny::ChildNodesOfType(), ISampleNode::containedMaterials(), INode::copyNumber(), INode::progeny(), and NodeUtils::progenyPlus().

getEdge()

double FormFactorDodecahedron::getEdge ( ) const

inline

Definition at line 31 of file FormFactorDodecahedron.h.

{ return m_edge; }

References m_edge.

Referenced by GUIDomainSampleVisitor::visit().

getName()

const std::string& IParametricComponent::getName ( ) const

inlineinherited

Definition at line 70 of file IParametricComponent.h.

{ return m_name; }

References IParametricComponent::m_name.

Referenced by Beam::Beam(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), IDetector::IDetector(), Instrument::Instrument(), IParametricComponent::IParametricComponent(), SampleBuilderNode::SampleBuilderNode(), Layer::clone(), INode::copyNumber(), IParametricComponent::createParameterTree(), IFormFactor::createSlicedFormFactor(), SampleToPython::defineInterferenceFunctions(), INode::displayName(), Beam::operator=(), SampleBuilderNode::operator=(), GUIObjectBuilder::populateInstrumentModel(), PyImportAssistant::populateModels(), GUIDomainSampleVisitor::populateSampleModel(), IParametricComponent::registerParameter(), IFormFactor::sliceFormFactor(), and GUIDomainSampleVisitor::visit().

isMagnetic()

bool ISampleNode::isMagnetic ( ) const

inherited

Returns true if there is any magnetic material in this ISampleNode.

Definition at line 40 of file ISampleNode.cpp.

{
    const auto materials = containedMaterials();
    return std::any_of(materials.cbegin(), materials.cend(),
                       [](const Material* mat) { return mat->isMagneticMaterial(); });
}

References ISampleNode::containedMaterials().

Referenced by ProcessedSample::initLayouts().

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material()

virtual const Material* ISampleNode::material ( ) const

inlinevirtualinherited

Returns nullptr, unless overwritten to return a specific material.

Reimplemented in Particle, and Layer.

Definition at line 37 of file ISampleNode.h.

{ return nullptr; }

Referenced by ISampleNode::containedMaterials(), FormFactorCoreShell::setAmbientMaterial(), FormFactorCrystal::setAmbientMaterial(), FormFactorWeighted::setAmbientMaterial(), FormFactorDecoratorMaterial::setAmbientMaterial(), IFormFactorDecorator::setAmbientMaterial(), and FormFactorDecoratorMaterial::setMaterial().

onChange()

void FormFactorDodecahedron::onChange ( )

finalprotectedvirtual

Action to be taken in inherited class when a parameter has changed.

Reimplemented from IParametricComponent.

Definition at line 48 of file FormFactorDodecahedron.cpp.

{
    double a = m_edge;
    setPolyhedron(topology, -1.113516364411607 * a,
                  {{0.8506508083520399 * a, 0 * a, -1.113516364411607 * a},
                   {0.2628655560595668 * a, 0.8090169943749473 * a, -1.113516364411607 * a},
                   {-0.6881909602355868 * a, 0.5 * a, -1.113516364411607 * a},
                   {-0.6881909602355868 * a, -0.5 * a, -1.113516364411607 * a},
                   {0.2628655560595668 * a, -0.8090169943749473 * a, -1.113516364411607 * a},
                   {1.376381920471174 * a, 0 * a, -0.2628655560595667 * a},
                   {0.42532540417602 * a, 1.309016994374947 * a, -0.2628655560595667 * a},
                   {-1.113516364411607 * a, 0.8090169943749475 * a, -0.2628655560595667 * a},
                   {-1.113516364411607 * a, -0.8090169943749475 * a, -0.2628655560595667 * a},
                   {0.42532540417602 * a, -1.309016994374947 * a, -0.2628655560595667 * a},
                   {-1.376381920471174 * a, 0 * a, 0.2628655560595667 * a},
                   {-0.42532540417602 * a, -1.309016994374947 * a, 0.2628655560595667 * a},
                   {1.113516364411607 * a, -0.8090169943749475 * a, 0.2628655560595667 * a},
                   {1.113516364411607 * a, 0.8090169943749475 * a, 0.2628655560595667 * a},
                   {-0.42532540417602 * a, 1.309016994374947 * a, 0.2628655560595667 * a},
                   {-0.8506508083520399 * a, 0 * a, 1.113516364411607 * a},
                   {-0.2628655560595668 * a, -0.8090169943749473 * a, 1.113516364411607 * a},
                   {0.6881909602355868 * a, -0.5 * a, 1.113516364411607 * a},
                   {0.6881909602355868 * a, 0.5 * a, 1.113516364411607 * a},
                   {-0.2628655560595668 * a, 0.8090169943749473 * a, 1.113516364411607 * a}});
    assert_platonic();
}

References IFormFactorPolyhedron::assert_platonic(), m_edge, IFormFactorPolyhedron::setPolyhedron(), and topology.

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parameter()

RealParameter * IParametricComponent::parameter ( const std::string &  name ) const

inherited

Returns parameter with given 'name'.

Definition at line 86 of file IParametricComponent.cpp.

{
    return m_pool->parameter(name);
}

References IParametricComponent::m_pool, and RealSpace::Particles::name().

Referenced by DepthProbeSimulation::initialize(), SpecularSimulation::initialize(), Lattice3D::initialize(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), IParticle::registerPosition(), Layer::registerThickness(), Lattice2D::setRotationEnabled(), and DistributionLogNormal::setUnits().

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parameterPool()

ParameterPool* IParametricComponent::parameterPool ( ) const

inlineinherited

Returns pointer to the parameter pool.

Definition at line 39 of file IParametricComponent.h.

{ return m_pool.get(); } // has non-const usages!

References IParametricComponent::m_pool.

Referenced by INode::INode(), IParametricComponent::IParametricComponent(), pyfmt2::argumentList(), SampleBuilderNode::borrow_builder_parameters(), SampleBuilderNode::reset(), and IDistribution1D::setUnits().

parametersToString()

std::string IParametricComponent::parametersToString ( ) const

inherited

Returns multiline string representing available parameters.

Definition at line 43 of file IParametricComponent.cpp.

{
    std::ostringstream result;
    std::unique_ptr<ParameterPool> P_pool(createParameterTree());
    result << *P_pool << "\n";
    return result.str();
}

References IParametricComponent::createParameterTree().

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parent() [1/2]

INode * INode::parent ( )

inherited

Definition at line 89 of file INode.cpp.

{
    return const_cast<INode*>(m_parent);
}

References INode::m_parent.

parent() [2/2]

const INode * INode::parent ( ) const

inherited

Definition at line 84 of file INode.cpp.

{
    return m_parent;
}

References INode::m_parent.

Referenced by INode::copyNumber(), INode::createParameterTree(), ParticleDistribution::generateParticles(), NodeUtils::nodePath(), Lattice2D::onChange(), SampleProvider::setBuilder(), SampleProvider::setParent(), and SampleProvider::setSample().

progeny()

std::vector< const INode * > INode::progeny ( ) const

inherited

Returns a vector of all descendants.

Definition at line 68 of file INode.cpp.

{
    std::vector<const INode*> result;
    result.push_back(this);
    for (const auto* child : getChildren()) {
        for (const auto* p : child->progeny())
            result.push_back(p);
    }
    return result;
}

References INode::getChildren().

Referenced by INode::createParameterTree(), and ParticleDistribution::generateParticles().

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radialExtension()

double IFormFactorPolyhedron::radialExtension ( ) const

finalvirtualinherited

Returns the (approximate in some cases) radial size of the particle of this form factor's shape.

This is used for SSCA calculations

Implements IFormFactor.

Definition at line 70 of file IFormFactorPolyhedron.cpp.

{
    return pimpl->radius();
}

References IFormFactorPolyhedron::pimpl.

registerChild()

void INode::registerChild ( INode *  node )

inherited

Definition at line 57 of file INode.cpp.

{
    ASSERT(node);
    node->setParent(this);
}

References ASSERT, and INode::setParent().

Referenced by Beam::Beam(), Crystal::Crystal(), IDetector::IDetector(), Instrument::Instrument(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), Particle::Particle(), ParticleDistribution::ParticleDistribution(), ParticleLayout::addAndRegisterAbstractParticle(), ParticleCoreShell::addAndRegisterCore(), MultiLayer::addAndRegisterInterface(), MultiLayer::addAndRegisterLayer(), ParticleCoreShell::addAndRegisterShell(), Layer::addLayout(), ParticleComposition::addParticlePointer(), ISimulation::initialize(), MesoCrystal::initialize(), Beam::operator=(), Instrument::operator=(), IParticle::rotate(), ParticleLayout::setAndRegisterInterferenceFunction(), ISimulation::setBackground(), InterferenceFunction1DLattice::setDecayFunction(), InterferenceFunction2DLattice::setDecayFunction(), Instrument::setDetector(), IDetector::setDetectorResolution(), Beam::setFootprintFactor(), Particle::setFormFactor(), InterferenceFunctionFinite3DLattice::setLattice(), InterferenceFunctionRadialParaCrystal::setProbabilityDistribution(), InterferenceFunction2DParaCrystal::setProbabilityDistributions(), ConvolutionDetectorResolution::setResolutionFunction(), IParticle::setRotation(), LayerInterface::setRoughness(), and InterferenceFunction2DSuperLattice::setSubstructureIFF().

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registerParameter()

RealParameter & IParametricComponent::registerParameter ( const std::string &  name, double *  parpointer  )

inherited

Definition at line 51 of file IParametricComponent.cpp.

{
    return m_pool->addParameter(
        new RealParameter(name, data, getName(), [&]() -> void { onChange(); }));
}

References IParametricComponent::getName(), IParametricComponent::m_pool, RealSpace::Particles::name(), and IParametricComponent::onChange().

Referenced by BasicLattice2D::BasicLattice2D(), Beam::Beam(), CylindersInBABuilder::CylindersInBABuilder(), DetectionProperties::DetectionProperties(), HexagonalLattice2D::HexagonalLattice2D(), IInterferenceFunction::IInterferenceFunction(), INode::INode(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), Lattice2D::Lattice2D(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleDistribution::ParticleDistribution(), PlainMultiLayerBySLDBuilder::PlainMultiLayerBySLDBuilder(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), ResonatorBuilder::ResonatorBuilder(), SquareLattice2D::SquareLattice2D(), TriangularRippleBuilder::TriangularRippleBuilder(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParametricComponent::registerVector(), ParticleLayout::registerWeight(), and Lattice2D::setRotationEnabled().

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registerVector()

void IParametricComponent::registerVector ( const std::string &  base_name, kvector_t *  p_vec, const std::string &  units = "nm"  )

inherited

Definition at line 57 of file IParametricComponent.cpp.

{
    registerParameter(XComponentName(base_name), &((*p_vec)[0])).setUnit(units);
    registerParameter(YComponentName(base_name), &((*p_vec)[1])).setUnit(units);
    registerParameter(ZComponentName(base_name), &((*p_vec)[2])).setUnit(units);
}

References ModelView::Utils::base_name(), IParametricComponent::registerParameter(), RealParameter::setUnit(), IParametricComponent::XComponentName(), IParametricComponent::YComponentName(), and IParametricComponent::ZComponentName().

Referenced by Beam::Beam(), DetectionProperties::DetectionProperties(), InterferenceFunctionTwin::InterferenceFunctionTwin(), MultiLayer::MultiLayer(), Lattice3D::initialize(), and IParticle::registerPosition().

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removeParameter()

void IParametricComponent::removeParameter ( const std::string &  name )

inherited

Definition at line 91 of file IParametricComponent.cpp.

{
    m_pool->removeParameter(name);
}

References IParametricComponent::m_pool, and RealSpace::Particles::name().

Referenced by IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParametricComponent::removeVector(), and Lattice2D::setRotationEnabled().

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removeVector()

void IParametricComponent::removeVector ( const std::string &  base_name )

inherited

Definition at line 96 of file IParametricComponent.cpp.

{
    removeParameter(XComponentName(base_name));
    removeParameter(YComponentName(base_name));
    removeParameter(ZComponentName(base_name));
}

References ModelView::Utils::base_name(), IParametricComponent::removeParameter(), IParametricComponent::XComponentName(), IParametricComponent::YComponentName(), and IParametricComponent::ZComponentName().

Referenced by IParticle::registerPosition().

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setAmbientMaterial()

void IBornFF::setAmbientMaterial ( const Material &  )

inlineoverridevirtualinherited

Passes the material in which this particle is embedded.

Implements IFormFactor.

Definition at line 49 of file IBornFF.h.

{}

setName()

void IParametricComponent::setName ( const std::string &  name )

inlineinherited

Definition at line 69 of file IParametricComponent.h.

{ m_name = name; }

References IParametricComponent::m_name, and RealSpace::Particles::name().

Referenced by BasicLattice2D::BasicLattice2D(), Beam::Beam(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), Crystal::Crystal(), DetectionProperties::DetectionProperties(), DistributionHandler::DistributionHandler(), FormFactorCoreShell::FormFactorCoreShell(), FormFactorCrystal::FormFactorCrystal(), FormFactorDecoratorMaterial::FormFactorDecoratorMaterial(), FormFactorDecoratorPositionFactor::FormFactorDecoratorPositionFactor(), FormFactorDecoratorRotation::FormFactorDecoratorRotation(), FormFactorWeighted::FormFactorWeighted(), HexagonalLattice2D::HexagonalLattice2D(), IDetector::IDetector(), INode::INode(), Instrument::Instrument(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunction3DLattice::InterferenceFunction3DLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), InterferenceFunctionFinite3DLattice::InterferenceFunctionFinite3DLattice(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionNone::InterferenceFunctionNone(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), ISampleBuilder::ISampleBuilder(), IsGISAXSDetector::IsGISAXSDetector(), Lattice3D::Lattice3D(), Layer::Layer(), LayerInterface::LayerInterface(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleCoreShell::ParticleCoreShell(), ParticleDistribution::ParticleDistribution(), ParticleLayout::ParticleLayout(), RectangularDetector::RectangularDetector(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), SampleBuilderNode::SampleBuilderNode(), SphericalDetector::SphericalDetector(), SquareLattice2D::SquareLattice2D(), Layer::clone(), LayersWithAbsorptionBuilder::createSampleByIndex(), Basic2DParaCrystalBuilder::createSampleByIndex(), ParticleInVacuumBuilder::createSampleByIndex(), SimpleMagneticRotationBuilder::createSampleByIndex(), DepthProbeSimulation::initialize(), GISASSimulation::initialize(), OffSpecularSimulation::initialize(), SpecularSimulation::initialize(), SpecularDetector1D::initialize(), MesoCrystal::initialize(), Particle::initialize(), ParticleComposition::initialize(), Beam::operator=(), SampleBuilderNode::operator=(), SampleBuilderNode::reset(), and SampleBuilderNode::setSBN().

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setParameterValue()

void IParametricComponent::setParameterValue ( const std::string &  name, double  value  )

inherited

Definition at line 65 of file IParametricComponent.cpp.

{
    if (name.find('*') == std::string::npos && name.find('/') == std::string::npos) {
        m_pool->setParameterValue(name, value);
    } else {
        std::unique_ptr<ParameterPool> P_pool{createParameterTree()};
        if (name.find('*') != std::string::npos)
            P_pool->setMatchedParametersValue(name, value);
        else
            P_pool->setParameterValue(name, value);
    }
}

References IParametricComponent::createParameterTree(), IParametricComponent::m_pool, RealSpace::Particles::name(), and ParameterPool::setMatchedParametersValue().

Referenced by AsymRippleBuilder::buildSample(), and IParametricComponent::setVectorValue().

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setParent()

void INode::setParent ( const INode *  newParent )

virtualinherited

Reimplemented in SampleProvider.

Definition at line 79 of file INode.cpp.

{
    m_parent = newParent;
}

References INode::m_parent.

Referenced by INode::registerChild(), SampleProvider::setBuilder(), and SampleProvider::setParent().

setPolyhedron()

void IFormFactorPolyhedron::setPolyhedron ( const PolyhedralTopology &  topology, double  z_bottom, const std::vector< kvector_t > &  vertices  )

protectedinherited

Called by child classes to set faces and other internal variables.

Definition at line 40 of file IFormFactorPolyhedron.cpp.

{
    pimpl = std::make_unique<Polyhedron>(topology, z_bottom, vertices);
}

References IFormFactorPolyhedron::pimpl.

Referenced by FormFactorAnisoPyramid::onChange(), FormFactorCantellatedCube::onChange(), FormFactorCone6::onChange(), FormFactorCuboctahedron::onChange(), onChange(), FormFactorIcosahedron::onChange(), FormFactorPyramid::onChange(), FormFactorTetrahedron::onChange(), and FormFactorTruncatedCube::onChange().

setSpecularInfo()

void IFormFactor::setSpecularInfo ( std::unique_ptr< const ILayerRTCoefficients >  , std::unique_ptr< const ILayerRTCoefficients >    )

virtualinherited

Sets reflection/transmission info.

Definition at line 84 of file IFormFactor.cpp.

{
}

setVectorValue()

void IParametricComponent::setVectorValue ( const std::string &  base_name, kvector_t  value  )

inherited

Definition at line 78 of file IParametricComponent.cpp.

{
    setParameterValue(XComponentName(base_name), value.x());
    setParameterValue(YComponentName(base_name), value.y());
    setParameterValue(ZComponentName(base_name), value.z());
}

References ModelView::Utils::base_name(), IParametricComponent::setParameterValue(), BasicVector3D< T >::x(), IParametricComponent::XComponentName(), BasicVector3D< T >::y(), IParametricComponent::YComponentName(), BasicVector3D< T >::z(), and IParametricComponent::ZComponentName().

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sliceFormFactor()

IFormFactor * IFormFactor::sliceFormFactor ( ZLimits  limits, const IRotation &  rot, kvector_t  translation  ) const

protectedvirtualinherited

Actually slices the form factor or throws an exception.

Reimplemented in FormFactorTruncatedSpheroid, FormFactorTruncatedSphere, FormFactorTetrahedron, FormFactorPyramid, FormFactorPrism6, FormFactorPrism3, FormFactorLongBoxLorentz, FormFactorLongBoxGauss, FormFactorFullSpheroid, FormFactorFullSphere, FormFactorEllipsoidalCylinder, FormFactorCylinder, FormFactorCuboctahedron, FormFactorCone6, FormFactorCone, FormFactorBox, and FormFactorAnisoPyramid.

Definition at line 94 of file IFormFactor.cpp.

{
    throw std::runtime_error(getName() + "::sliceFormFactor error: not implemented!");
}

References IParametricComponent::getName().

Referenced by IFormFactor::createSlicedFormFactor().

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topZ()

double IFormFactorPolyhedron::topZ ( const IRotation &  rotation ) const

finalvirtualinherited

Returns the z-coordinate of the lowest point in this shape after a given rotation.

Reimplemented from IBornFF.

Definition at line 51 of file IFormFactorPolyhedron.cpp.

{
    return TopZ(pimpl->vertices(), rotation);
}

References IFormFactorPolyhedron::pimpl, and IBornFF::TopZ().

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TopZ()

double IBornFF::TopZ ( const std::vector< kvector_t > &  vertices, const IRotation &  rotation  )

staticprotectedinherited

Calculates the z-coordinate of the highest vertex after rotation.

Definition at line 98 of file IBornFF.cpp.

{
    ASSERT(vertices.size());
    return algo::max_value(
        vertices.begin(), vertices.end(),
        [&](const kvector_t& vertex) -> double { return rotation.transformed(vertex).z(); });
}

References ASSERT, and algo::max_value().

Referenced by IFormFactorPolyhedron::topZ(), IFormFactorPrism::topZ(), and IBornFF::topZ().

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transferToCPP()

virtual void ICloneable::transferToCPP ( )

inlinevirtualinherited

Used for Python overriding of clone (see swig/tweaks.py)

Definition at line 34 of file ICloneable.h.

treeToString()

std::string INode::treeToString ( ) const

virtualinherited

Returns multiline string representing tree structure below the node.

Definition at line 52 of file INode.cpp.

{
    return NodeUtils::nodeToString(this);
}

References NodeUtils::nodeToString().

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volume()

double IFormFactorPolyhedron::volume ( ) const

finalvirtualinherited

Returns the total volume of the particle of this form factor's shape.

Reimplemented from IFormFactor.

Definition at line 66 of file IFormFactorPolyhedron.cpp.

{
    return pimpl->volume();
}

References IFormFactorPolyhedron::pimpl.

XComponentName()

std::string IParametricComponent::XComponentName ( const std::string &  base_name )

staticinherited

Definition at line 103 of file IParametricComponent.cpp.

{
    return base_name + "X";
}

References ModelView::Utils::base_name().

Referenced by Lattice3D::initialize(), IParticle::registerPosition(), IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().

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YComponentName()

std::string IParametricComponent::YComponentName ( const std::string &  base_name )

staticinherited

Definition at line 108 of file IParametricComponent.cpp.

{
    return base_name + "Y";
}

References ModelView::Utils::base_name().

Referenced by IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().

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ZComponentName()

std::string IParametricComponent::ZComponentName ( const std::string &  base_name )

staticinherited

Definition at line 113 of file IParametricComponent.cpp.

{
    return base_name + "Z";
}

References ModelView::Utils::base_name().

Referenced by IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().

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Member Data Documentation

m_edge

const double& FormFactorDodecahedron::m_edge

private

Definition at line 38 of file FormFactorDodecahedron.h.

Referenced by clone(), getEdge(), and onChange().

m_name

std::string IParametricComponent::m_name

privateinherited

Definition at line 73 of file IParametricComponent.h.

Referenced by IParametricComponent::getName(), and IParametricComponent::setName().

m_NP

const size_t INode::m_NP

protectedinherited

Definition at line 88 of file INode.h.

Referenced by INode::INode().

m_P

std::vector<double> INode::m_P

protectedinherited

Definition at line 89 of file INode.h.

Referenced by INode::INode(), and IFootprintFactor::setWidthRatio().

m_parent

const INode* INode::m_parent {nullptr}

privateinherited

Definition at line 83 of file INode.h.

Referenced by INode::displayName(), INode::parent(), and INode::setParent().

m_pool

std::unique_ptr<ParameterPool> IParametricComponent::m_pool

privateinherited

parameter pool (kind of pointer-to-implementation)

Definition at line 74 of file IParametricComponent.h.

Referenced by IParametricComponent::createParameterTree(), IParametricComponent::parameter(), IParametricComponent::parameterPool(), IParametricComponent::registerParameter(), IParametricComponent::removeParameter(), and IParametricComponent::setParameterValue().

m_shape3D

std::unique_ptr<IShape3D> IBornFF::m_shape3D

protectedinherited

IShape3D object, used to retrieve vertices (which may be approximate in the case of round shapes).

For soft particles, this will be a hard mean shape.

Definition at line 77 of file IBornFF.h.

Referenced by IBornFF::bottomZ(), FormFactorCone::onChange(), FormFactorCylinder::onChange(), FormFactorEllipsoidalCylinder::onChange(), FormFactorFullSpheroid::onChange(), FormFactorHemiEllipsoid::onChange(), FormFactorHollowSphere::onChange(), FormFactorLongBoxGauss::onChange(), FormFactorLongBoxLorentz::onChange(), FormFactorTruncatedSphere::onChange(), FormFactorTruncatedSpheroid::onChange(), IProfileRectangularRipple::onChange(), ICosineRipple::onChange(), ISawtoothRipple::onChange(), FormFactorSphereGaussianRadius::onChange(), FormFactorSphereLogNormalRadius::onChange(), and IBornFF::topZ().

pimpl

std::unique_ptr<Polyhedron> IFormFactorPolyhedron::pimpl

privateinherited

Definition at line 52 of file IFormFactorPolyhedron.h.

Referenced by IFormFactorPolyhedron::assert_platonic(), IFormFactorPolyhedron::bottomZ(), IFormFactorPolyhedron::evaluate_centered(), IFormFactorPolyhedron::evaluate_for_q(), IFormFactorPolyhedron::radialExtension(), IFormFactorPolyhedron::setPolyhedron(), IFormFactorPolyhedron::topZ(), and IFormFactorPolyhedron::volume().

topology

const PolyhedralTopology FormFactorDodecahedron::topology

staticprivate

Initial value:

= {{
                                                              {{0, 4, 3, 2, 1}, false},
                                                              
                                                              {{0, 5, 12, 9, 4}, false},
                                                              {{4, 9, 11, 8, 3}, false},
                                                              {{3, 8, 10, 7, 2}, false},
                                                              {{2, 7, 14, 6, 1}, false},
                                                              {{1, 6, 13, 5, 0}, false},
                                                              
                                                              {{8, 11, 16, 15, 10}, false},
                                                              {{9, 12, 17, 16, 11}, false},
                                                              {{5, 13, 18, 17, 12}, false},
                                                              {{6, 14, 19, 18, 13}, false},
                                                              {{7, 10, 15, 19, 14}, false},
                                                              
                                                              {{15, 16, 17, 18, 19}, false}},
                                                             true}

Definition at line 37 of file FormFactorDodecahedron.h.

Referenced by onChange().

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The documentation for this class was generated from the following files:

• /home/www/ba/Sample/HardParticle/FormFactorDodecahedron.h
• /home/www/ba/Sample/HardParticle/FormFactorDodecahedron.cpp