IsGISAXSDetector Class Reference

A spherical detector used for validation with IsGISAXS results. More...

Inheritance diagram for IsGISAXSDetector:

Collaboration diagram for IsGISAXSDetector:

Public Types
using	const_iterator = const SimulationAreaIterator &

Public Member Functions
	IsGISAXSDetector ()
	IsGISAXSDetector (const IsGISAXSDetector &other)
	IsGISAXSDetector (size_t n_phi, double phi_min, double phi_max, size_t n_alpha, double alpha_min, double alpha_max)
void	accept (INodeVisitor *visitor) const final
	Calls the INodeVisitor's visit method. More...
std::vector< size_t >	active_indices () const
	Returns vector of unmasked detector indices. More...
void	addAxis (const IAxis &axis)
void	addMask (const IShape2D &shape, bool mask_value=true)
	Adds mask of given shape to the stack of detector masks. More...
void	applyDetectorResolution (OutputData< double > *p_intensity_map) const
	Applies the detector resolution to the given intensity maps. More...
const IAxis &	axis (size_t index) const
size_t	axisBinIndex (size_t index, size_t selected_axis) const
	Calculate axis index for given global index. More...
IsGISAXSDetector *	clone () const override
int	copyNumber (const INode *node) const
	Returns copyNumber of child, which takes into account existence of children with same name. More...
std::unique_ptr< DetectorContext >	createContext () const
OutputData< double > *	createDetectorIntensity (const std::vector< SimulationElement > &elements) const
	Returns new intensity map with detector resolution applied. More...
std::unique_ptr< OutputData< double > >	createDetectorMap () const
	Returns empty detector map in given axes units. More...
ParameterPool *	createParameterTree () const
	Creates new parameter pool, with all local parameters and those of its children. More...
Axes::Units	defaultAxesUnits () const override
	return default axes units More...
const DetectionProperties &	detectionProperties () const
	Returns detection properties. More...
const DetectorMask *	detectorMask () const override
	Returns detector masks container. More...
const IDetectorResolution *	detectorResolution () const
	Returns a pointer to detector resolution object. More...
size_t	dimension () const
	Returns actual dimensionality of the detector (number of defined axes) More...
std::string	displayName () const
	Returns display name, composed from the name of node and it's copy number. More...
std::vector< const INode * >	getChildren () const override
	Returns a vector of children. More...
const std::string &	getName () const
virtual void	init (const Beam &)
	Inits detector with the beam settings. More...
void	iterate (std::function< void(const_iterator)> func, bool visit_masks=false) const
void	maskAll ()
	Put the mask for all detector channels (i.e. exclude whole detector from the analysis) More...
size_t	numberOfSimulationElements () const
	Returns number of simulation elements. More...
virtual void	onChange ()
	Action to be taken in inherited class when a parameter has changed. More...
RealParameter *	parameter (const std::string &name) const
	Returns parameter with given 'name'. More...
ParameterPool *	parameterPool () const
	Returns pointer to the parameter pool. More...
std::string	parametersToString () const
	Returns multiline string representing available parameters. More...
INode *	parent ()
const INode *	parent () const
std::vector< const INode * >	progeny () const
	Returns a vector of all descendants. More...
const RegionOfInterest *	regionOfInterest () const override
	Returns region of interest if exists. More...
void	registerChild (INode *node)
RealParameter &	registerParameter (const std::string &name, double *parpointer)
void	registerVector (const std::string &base_name, kvector_t *p_vec, const std::string &units="nm")
void	removeParameter (const std::string &name)
void	removeVector (const std::string &base_name)
void	resetRegionOfInterest () override
	Resets region of interest making whole detector plane available for the simulation. More...
void	setAnalyzerProperties (const kvector_t direction, double efficiency, double total_transmission)
	Sets the polarization analyzer characteristics of the detector. More...
void	setDetectorParameters (size_t n_x, double x_min, double x_max, size_t n_y, double y_min, double y_max)
	Sets detector parameters using angle ranges. More...
void	setDetectorResolution (const IDetectorResolution &p_detector_resolution)
	Sets the detector resolution. More...
void	setName (const std::string &name)
void	setParameterValue (const std::string &name, double value)
virtual void	setParent (const INode *newParent)
void	setRegionOfInterest (double xlow, double ylow, double xup, double yup)
	Sets rectangular region of interest with lower left and upper right corners defined. More...
void	setResolutionFunction (const IResolutionFunction2D &resFunc)
void	setVectorValue (const std::string &base_name, kvector_t value)
size_t	totalSize () const
	Returns total number of pixels. More...
virtual void	transferToCPP ()
	Used for Python overriding of clone (see swig/tweaks.py) More...
virtual std::string	treeToString () const
	Returns multiline string representing tree structure below the node. More...

Static Public Member Functions
static std::string	XComponentName (const std::string &base_name)
static std::string	YComponentName (const std::string &base_name)
static std::string	ZComponentName (const std::string &base_name)

Protected Member Functions
std::string	axisName (size_t index) const override
	Returns the name for the axis with given index. More...
void	clear ()
std::unique_ptr< IAxis >	createAxis (size_t index, size_t n_bins, double min, double max) const override
	Generates an axis with correct name and default binning for given index. More...
IPixel *	createPixel (size_t index) const override
	Creates an IPixel for the given OutputData object and index. More...
size_t	getGlobalIndex (size_t x, size_t y) const
	Calculate global index from two axis indices. More...
size_t	indexOfSpecular (const Beam &beam) const override
	Returns index of pixel that contains the specular wavevector. More...

Protected Attributes
const size_t	m_NP
std::vector< double >	m_P

Private Member Functions
void	setDataToDetectorMap (OutputData< double > &detectorMap, const std::vector< SimulationElement > &elements) const

Private Attributes
CloneableVector< IAxis >	m_axes
DetectionProperties	m_detection_properties
DetectorMask	m_detector_mask
std::unique_ptr< IDetectorResolution >	m_detector_resolution
std::string	m_name
const INode *	m_parent {nullptr}
std::unique_ptr< ParameterPool >	m_pool
	parameter pool (kind of pointer-to-implementation) More...
std::unique_ptr< RegionOfInterest >	m_region_of_interest

Detailed Description

A spherical detector used for validation with IsGISAXS results.

Definition at line 23 of file IsGISAXSDetector.h.

Member Typedef Documentation

const_iterator

using IDetector::const_iterator = const SimulationAreaIterator&

inherited

Definition at line 38 of file IDetector.h.

Constructor & Destructor Documentation

IsGISAXSDetector() [1/3]

IsGISAXSDetector::IsGISAXSDetector

(

)

Definition at line 18 of file IsGISAXSDetector.cpp.

{
    setName("IsGISAXSDetector");
}

References IParametricComponent::setName().

Referenced by clone().

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IsGISAXSDetector() [2/3]

IsGISAXSDetector::IsGISAXSDetector	(	size_t	n_phi,
		double	phi_min,
		double	phi_max,
		size_t	n_alpha,
		double	alpha_min,
		double	alpha_max
	)

Definition at line 23 of file IsGISAXSDetector.cpp.

{
    setName("IsGISAXSDetector");
    setDetectorParameters(n_phi, phi_min, phi_max, n_alpha, alpha_min, alpha_max);
}

References IDetector2D::setDetectorParameters(), and IParametricComponent::setName().

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IsGISAXSDetector() [3/3]

IsGISAXSDetector::IsGISAXSDetector

(

const IsGISAXSDetector &

other

)

Definition at line 30 of file IsGISAXSDetector.cpp.

                                                                : SphericalDetector(other)
{
    setName("IsGISAXSDetector");
}

References IParametricComponent::setName().

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Member Function Documentation

accept()

void IsGISAXSDetector::accept ( INodeVisitor *  visitor ) const

inlinefinalvirtual

Calls the INodeVisitor's visit method.

Implements INode.

Definition at line 32 of file IsGISAXSDetector.h.

{ visitor->visit(this); }

active_indices()

std::vector< size_t > IDetector2D::active_indices ( ) const

inherited

Returns vector of unmasked detector indices.

Definition at line 60 of file IDetector2D.cpp.

{
    std::vector<size_t> result;
    SimulationArea area(this);
    for (SimulationArea::iterator it = area.begin(); it != area.end(); ++it)
        result.push_back(it.detectorIndex());
    return result;
}

References SimulationArea::begin(), and SimulationArea::end().

Referenced by DetectorContext::setup_context().

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addAxis()

void IDetector::addAxis ( const IAxis &  axis )

inherited

Definition at line 41 of file IDetector.cpp.

{
    m_axes.push_back(axis.clone());
}

References IDetector::axis(), IAxis::clone(), IDetector::m_axes, and CloneableVector< T >::push_back().

Referenced by SpecularDetector1D::SpecularDetector1D(), SpecularDetector1D::setAxis(), IDetector2D::setDetectorParameters(), and SpecularSimulation::setScan().

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addMask()

void IDetector2D::addMask ( const IShape2D &  shape, bool  mask_value = true  )

inherited

Adds mask of given shape to the stack of detector masks.

The mask value 'true' means that the channel will be excluded from the simulation. The mask which is added last has priority.

Parameters

shape	The shape of mask (Rectangle, Polygon, Line, Ellipse)
mask_value	The value of mask

Definition at line 74 of file IDetector2D.cpp.

{
    m_detector_mask.addMask(shape, mask_value);
    m_detector_mask.initMaskData(*this);
}

References DetectorMask::addMask(), DetectorMask::initMaskData(), and IDetector2D::m_detector_mask.

Referenced by ISimulation2D::addMask(), DetectorItem::addMasksToDomain(), and IDetector2D::maskAll().

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applyDetectorResolution()

void IDetector::applyDetectorResolution ( OutputData< double > *  p_intensity_map ) const

inherited

Applies the detector resolution to the given intensity maps.

Definition at line 118 of file IDetector.cpp.

{
    if (!p_intensity_map)
        throw std::runtime_error("IDetector::applyDetectorResolution() -> "
                                 "Error! Null pointer to intensity map");
    if (m_detector_resolution) {
        m_detector_resolution->applyDetectorResolution(p_intensity_map);
        if (detectorMask() && detectorMask()->hasMasks()) {
            // sets amplitude in masked areas to zero
            std::unique_ptr<OutputData<double>> buff(new OutputData<double>());
            buff->copyShapeFrom(*p_intensity_map);
 
            iterate([&](const_iterator it) {
                (*buff)[it.roiIndex()] = (*p_intensity_map)[it.roiIndex()];
            });
            p_intensity_map->setRawDataVector(buff->getRawDataVector());
        }
    }
}

References IDetector::detectorMask(), IDetector::iterate(), IDetector::m_detector_resolution, SimulationAreaIterator::roiIndex(), and OutputData< T >::setRawDataVector().

Referenced by IDetector::createDetectorIntensity(), and OffSpecularSimulation::transferDetectorImage().

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axis()

const IAxis & IDetector::axis ( size_t  index ) const

inherited

Definition at line 56 of file IDetector.cpp.

{
    if (index < dimension())
        return *m_axes[index];
    throw std::runtime_error("Error in IDetector::getAxis: not so many axes in this detector.");
}

References IDetector::dimension(), and IDetector::m_axes.

Referenced by RegionOfInterest::RegionOfInterest(), SpecularDetector1D::SpecularDetector1D(), IDetector::addAxis(), UnitConverterSimple::addDetectorAxis(), OffSpecularConverter::addDetectorYAxis(), IDetector::createDetectorMap(), RectangularDetector::createPixel(), SphericalDetector::createPixel(), IDetector2D::getGlobalIndex(), RectangularDetector::getHeight(), RectangularDetector::getNbinsX(), RectangularDetector::getNbinsY(), RectangularDetector::getWidth(), RectangularDetector::indexOfSpecular(), SphericalDetector::indexOfSpecular(), DetectorMask::initMaskData(), OffSpecularSimulation::intensityMapSize(), DetectorUtils::isQuadratic(), RectangularDetector::regionOfInterestPixel(), SpecularDetector1D::setAxis(), TransformFromDomain::setSphericalDetector(), OffSpecularSimulation::transferDetectorImage(), and OffSpecularSimulation::transferResultsToIntensityMap().

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axisBinIndex()

size_t IDetector::axisBinIndex ( size_t  index, size_t  selected_axis  ) const

inherited

Calculate axis index for given global index.

Definition at line 63 of file IDetector.cpp.

{
    const size_t dim = dimension();
    size_t remainder(index);
    size_t i_axis = dim;
    for (size_t i = 0; i < dim; ++i) {
        --i_axis;
        if (selected_axis == i_axis)
            return remainder % m_axes[i_axis]->size();
        remainder /= m_axes[i_axis]->size();
    }
    throw std::runtime_error("IDetector::getAxisBinIndex() -> "
                             "Error! No axis with given number");
}

References IDetector::dimension(), and IDetector::m_axes.

Referenced by RectangularDetector::createPixel(), and SphericalDetector::createPixel().

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axisName()

std::string SphericalDetector::axisName ( size_t  index ) const

overrideprotectedvirtualinherited

Returns the name for the axis with given index.

Implements IDetector.

Definition at line 68 of file SphericalDetector.cpp.

{
    switch (index) {
    case 0:
        return "phi_f";
    case 1:
        return "alpha_f";
    default:
        throw std::runtime_error(
            "SphericalDetector::getAxisName(size_t index) -> Error! index > 1");
    }
}

Referenced by createAxis().

clear()

void IDetector::clear ( )

protectedinherited

Definition at line 51 of file IDetector.cpp.

{
    m_axes.clear();
}

References IDetector::m_axes.

Referenced by SpecularDetector1D::setAxis(), and IDetector2D::setDetectorParameters().

clone()

IsGISAXSDetector * IsGISAXSDetector::clone ( ) const

overridevirtual

Implements IDetector2D.

Definition at line 35 of file IsGISAXSDetector.cpp.

{
    return new IsGISAXSDetector(*this);
}

References IsGISAXSDetector().

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copyNumber()

int INode::copyNumber ( const INode *  node ) const

inherited

Returns copyNumber of child, which takes into account existence of children with same name.

Definition at line 94 of file INode.cpp.

{
    if (node->parent() != this)
        return -1;
 
    int result(-1), count(0);
    for (auto child : getChildren()) {
 
        if (child == nullptr)
            throw std::runtime_error("INode::copyNumber() -> Error. Nullptr as child.");
 
        if (child == node)
            result = count;
 
        if (child->getName() == node->getName())
            ++count;
    }
 
    return count > 1 ? result : -1;
}

References INode::getChildren(), IParametricComponent::getName(), and INode::parent().

Referenced by INode::displayName().

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createAxis()

std::unique_ptr< IAxis > IsGISAXSDetector::createAxis ( size_t  index, size_t  n_bins, double  min, double  max  ) const

overrideprotectedvirtual

Generates an axis with correct name and default binning for given index.

Reimplemented from IDetector.

Definition at line 40 of file IsGISAXSDetector.cpp.

{
    if (max <= min) {
        throw std::runtime_error("IsGISAXSDetector::createAxis() -> Error! max <= min");
    }
    if (n_bins == 0) {
        throw std::runtime_error(
            "IsGISAXSDetector::createAxis() -> Error! Number n_bins can't be zero.");
    }
    return std::make_unique<CustomBinAxis>(axisName(index), n_bins, min, max);
}

References SphericalDetector::axisName().

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createContext()

std::unique_ptr< DetectorContext > IDetector2D::createContext ( ) const

inherited

Definition at line 69 of file IDetector2D.cpp.

{
    return std::make_unique<DetectorContext>(this);
}

Referenced by ISimulation2D::prepareSimulation().

createDetectorIntensity()

OutputData< double > * IDetector::createDetectorIntensity ( const std::vector< SimulationElement > &  elements ) const

inherited

Returns new intensity map with detector resolution applied.

Map will be cropped to ROI if ROI is present.

Definition at line 144 of file IDetector.cpp.

{
    std::unique_ptr<OutputData<double>> detectorMap(createDetectorMap());
    if (!detectorMap)
        throw std::runtime_error("Instrument::createDetectorIntensity:"
                                 "can't create detector map.");
 
    setDataToDetectorMap(*detectorMap, elements);
    if (m_detector_resolution)
        applyDetectorResolution(detectorMap.get());
 
    return detectorMap.release();
}

References IDetector::applyDetectorResolution(), IDetector::createDetectorMap(), IDetector::m_detector_resolution, and IDetector::setDataToDetectorMap().

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createDetectorMap()

std::unique_ptr< OutputData< double > > IDetector::createDetectorMap ( ) const

inherited

Returns empty detector map in given axes units.

Definition at line 158 of file IDetector.cpp.

{
    const size_t dim = dimension();
    if (dim == 0)
        throw std::runtime_error(
            "Error in IDetector::createDetectorMap: dimensions of the detector are undefined");
 
    std::unique_ptr<OutputData<double>> result(new OutputData<double>);
    for (size_t i = 0; i < dim; ++i)
        if (auto roi = regionOfInterest())
            result->addAxis(*roi->clipAxisToRoi(i, axis(i)));
        else
            result->addAxis(axis(i));
 
    return result;
}

References IDetector::axis(), IDetector::dimension(), and IDetector::regionOfInterest().

Referenced by IDetector::createDetectorIntensity().

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createParameterTree()

ParameterPool * INode::createParameterTree ( ) const

virtualinherited

Creates new parameter pool, with all local parameters and those of its children.

Reimplemented from IParametricComponent.

Definition at line 126 of file INode.cpp.

{
    std::unique_ptr<ParameterPool> result(new ParameterPool);
 
    for (const INode* child : progeny()) {
        const std::string path = NodeUtils::nodePath(child, parent()) + "/";
        child->parameterPool()->copyToExternalPool(path, result.get());
    }
 
    return result.release();
}

References NodeUtils::nodePath(), INode::parent(), and INode::progeny().

Referenced by ISimulation::runSimulation(), DepthProbeSimulation::validateParametrization(), OffSpecularSimulation::validateParametrization(), and SpecularSimulation::validateParametrization().

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createPixel()

IPixel * SphericalDetector::createPixel ( size_t  index ) const

overrideprotectedvirtualinherited

Creates an IPixel for the given OutputData object and index.

Implements IDetector2D.

Definition at line 56 of file SphericalDetector.cpp.

{
    const IAxis& phi_axis = axis(0);
    const IAxis& alpha_axis = axis(1);
    const size_t phi_index = axisBinIndex(index, 0);
    const size_t alpha_index = axisBinIndex(index, 1);
 
    const Bin1D alpha_bin = alpha_axis.bin(alpha_index);
    const Bin1D phi_bin = phi_axis.bin(phi_index);
    return new SphericalPixel(alpha_bin, phi_bin);
}

References IDetector::axis(), IDetector::axisBinIndex(), and IAxis::bin().

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defaultAxesUnits()

Axes::Units SphericalDetector::defaultAxesUnits ( ) const

overridevirtualinherited

return default axes units

Reimplemented from IDetector.

Definition at line 51 of file SphericalDetector.cpp.

{
    return Axes::Units::RADIANS;
}

detectionProperties()

const DetectionProperties& IDetector::detectionProperties ( ) const

inlineinherited

Returns detection properties.

Definition at line 82 of file IDetector.h.

{ return m_detection_properties; }

Referenced by ISimulation2D::generateSimulationElements(), ISimulation2D::generateSingleThreadedComputation(), SpecularSimulation::generateSingleThreadedComputation(), TransformFromDomain::setDetectorProperties(), and DetectorContext::setup_context().

detectorMask()

const DetectorMask * IDetector2D::detectorMask ( ) const

overridevirtualinherited

Returns detector masks container.

Implements IDetector.

Definition at line 87 of file IDetector2D.cpp.

{
    return &m_detector_mask;
}

References IDetector2D::m_detector_mask.

detectorResolution()

const IDetectorResolution * IDetector::detectorResolution ( ) const

inherited

Returns a pointer to detector resolution object.

Definition at line 138 of file IDetector.cpp.

{
    return m_detector_resolution.get();
}

References IDetector::m_detector_resolution.

Referenced by TransformFromDomain::setDetectorResolution().

dimension()

size_t IDetector::dimension ( ) const

inherited

Returns actual dimensionality of the detector (number of defined axes)

Definition at line 46 of file IDetector.cpp.

{
    return m_axes.size();
}

References IDetector::m_axes.

Referenced by OffSpecularConverter::OffSpecularConverter(), RectangularConverter::RectangularConverter(), SimulationArea::SimulationArea(), SphericalConverter::SphericalConverter(), IDetector::axis(), IDetector::axisBinIndex(), IDetector::createDetectorMap(), IDetector2D::getGlobalIndex(), RectangularDetector::indexOfSpecular(), SphericalDetector::indexOfSpecular(), DetectorMask::initMaskData(), DetectorUtils::isQuadratic(), IDetector::iterate(), IDetector2D::maskAll(), IDetector::totalSize(), OffSpecularSimulation::transferDetectorImage(), and OffSpecularSimulation::updateIntensityMap().

displayName()

std::string INode::displayName ( ) const

inherited

Returns display name, composed from the name of node and it's copy number.

Definition at line 115 of file INode.cpp.

{
    std::string result = getName();
    if (m_parent) {
        int index = m_parent->copyNumber(this);
        if (index >= 0)
            result = result + std::to_string(index);
    }
    return result;
}

References INode::copyNumber(), IParametricComponent::getName(), and INode::m_parent.

Referenced by NodeUtils::nodePath().

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getChildren()

std::vector< const INode * > IDetector::getChildren ( ) const

overridevirtualinherited

Returns a vector of children.

Reimplemented from INode.

Definition at line 192 of file IDetector.cpp.

{
    return std::vector<const INode*>() << &m_detection_properties << m_detector_resolution;
}

References IDetector::m_detection_properties, and IDetector::m_detector_resolution.

getGlobalIndex()

size_t IDetector2D::getGlobalIndex ( size_t  x, size_t  y  ) const

protectedinherited

Calculate global index from two axis indices.

Definition at line 92 of file IDetector2D.cpp.

{
    if (dimension() != 2)
        return totalSize();
    return x * axis(1).size() + y;
}

References IDetector::axis(), IDetector::dimension(), IAxis::size(), and IDetector::totalSize().

Referenced by RectangularDetector::indexOfSpecular(), and SphericalDetector::indexOfSpecular().

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getName()

const std::string& IParametricComponent::getName ( ) const

inlineinherited

Definition at line 70 of file IParametricComponent.h.

{ return m_name; }

References IParametricComponent::m_name.

Referenced by Beam::Beam(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), IDetector::IDetector(), Instrument::Instrument(), IParametricComponent::IParametricComponent(), SampleBuilderNode::SampleBuilderNode(), Layer::clone(), INode::copyNumber(), IParametricComponent::createParameterTree(), IFormFactor::createSlicedFormFactor(), SampleToPython::defineInterferenceFunctions(), INode::displayName(), Beam::operator=(), SampleBuilderNode::operator=(), GUIObjectBuilder::populateInstrumentModel(), PyImportAssistant::populateModels(), GUIDomainSampleVisitor::populateSampleModel(), IParametricComponent::registerParameter(), IFormFactor::sliceFormFactor(), and GUIDomainSampleVisitor::visit().

indexOfSpecular()

size_t IsGISAXSDetector::indexOfSpecular ( const Beam &  beam ) const

overrideprotectedvirtual

Returns index of pixel that contains the specular wavevector.

If no pixel contains this specular wavevector, the number of pixels is returned. This corresponds to an overflow index.

Implements IDetector2D.

Definition at line 53 of file IsGISAXSDetector.cpp.

{
    return totalSize();
}

References IDetector::totalSize().

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init()

virtual void IDetector::init ( const Beam &  )

inlinevirtualinherited

Inits detector with the beam settings.

Reimplemented in RectangularDetector.

Definition at line 46 of file IDetector.h.

{}

iterate()

void IDetector::iterate ( std::function< void(const_iterator)>  func, bool  visit_masks = false  ) const

inherited

Definition at line 197 of file IDetector.cpp.

{
    if (this->dimension() == 0)
        return;
 
    if (visit_masks) {
        SimulationRoiArea area(this);
        for (SimulationRoiArea::iterator it = area.begin(); it != area.end(); ++it)
            func(it);
    } else {
        SimulationArea area(this);
        for (SimulationArea::iterator it = area.begin(); it != area.end(); ++it)
            func(it);
    }
}

References SimulationArea::begin(), IDetector::dimension(), and SimulationArea::end().

Referenced by IDetector::applyDetectorResolution(), ISimulation::convertData(), GISASSimulation::intensityMapSize(), IDetector::numberOfSimulationElements(), and IDetector::setDataToDetectorMap().

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maskAll()

void IDetector2D::maskAll ( )

inherited

Put the mask for all detector channels (i.e. exclude whole detector from the analysis)

Definition at line 80 of file IDetector2D.cpp.

{
    if (dimension() != 2)
        return;
    addMask(InfinitePlane(), true);
}

References IDetector2D::addMask(), and IDetector::dimension().

Referenced by ISimulation2D::maskAll().

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numberOfSimulationElements()

size_t IDetector::numberOfSimulationElements ( ) const

inherited

Returns number of simulation elements.

Definition at line 185 of file IDetector.cpp.

{
    size_t result(0);
    iterate([&result](const_iterator) { ++result; });
    return result;
}

References IDetector::iterate().

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onChange()

virtual void IParametricComponent::onChange ( )

inlinevirtualinherited

Action to be taken in inherited class when a parameter has changed.

Reimplemented in IProfileRipple, Lattice3D, InterferenceFunction3DLattice, InterferenceFunction2DLattice, FormFactorSphereLogNormalRadius, FormFactorSphereGaussianRadius, FormFactorGaussSphere, ISawtoothRipple, ICosineRipple, IProfileRectangularRipple, FormFactorTruncatedSpheroid, FormFactorTruncatedSphere, FormFactorTruncatedCube, FormFactorTetrahedron, FormFactorPyramid, FormFactorPrism6, FormFactorPrism3, FormFactorLongBoxLorentz, FormFactorLongBoxGauss, FormFactorIcosahedron, FormFactorHollowSphere, FormFactorHemiEllipsoid, FormFactorFullSpheroid, FormFactorFullSphere, FormFactorEllipsoidalCylinder, FormFactorDodecahedron, FormFactorCylinder, FormFactorCuboctahedron, FormFactorCone6, FormFactorCone, FormFactorCantellatedCube, FormFactorBox, FormFactorAnisoPyramid, and Lattice2D.

Definition at line 59 of file IParametricComponent.h.

{}

Referenced by Lattice2D::onChange(), and IParametricComponent::registerParameter().

parameter()

RealParameter * IParametricComponent::parameter ( const std::string &  name ) const

inherited

Returns parameter with given 'name'.

Definition at line 86 of file IParametricComponent.cpp.

{
    return m_pool->parameter(name);
}

References IParametricComponent::m_pool, and RealSpace::Particles::name().

Referenced by DepthProbeSimulation::initialize(), SpecularSimulation::initialize(), Lattice3D::initialize(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), IParticle::registerPosition(), Layer::registerThickness(), Lattice2D::setRotationEnabled(), and DistributionLogNormal::setUnits().

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parameterPool()

ParameterPool* IParametricComponent::parameterPool ( ) const

inlineinherited

Returns pointer to the parameter pool.

Definition at line 39 of file IParametricComponent.h.

{ return m_pool.get(); } // has non-const usages!

References IParametricComponent::m_pool.

Referenced by INode::INode(), IParametricComponent::IParametricComponent(), pyfmt2::argumentList(), SampleBuilderNode::borrow_builder_parameters(), SampleBuilderNode::reset(), and IDistribution1D::setUnits().

parametersToString()

std::string IParametricComponent::parametersToString ( ) const

inherited

Returns multiline string representing available parameters.

Definition at line 43 of file IParametricComponent.cpp.

{
    std::ostringstream result;
    std::unique_ptr<ParameterPool> P_pool(createParameterTree());
    result << *P_pool << "\n";
    return result.str();
}

References IParametricComponent::createParameterTree().

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parent() [1/2]

INode * INode::parent ( )

inherited

Definition at line 89 of file INode.cpp.

{
    return const_cast<INode*>(m_parent);
}

References INode::m_parent.

parent() [2/2]

const INode * INode::parent ( ) const

inherited

Definition at line 84 of file INode.cpp.

{
    return m_parent;
}

References INode::m_parent.

Referenced by INode::copyNumber(), INode::createParameterTree(), ParticleDistribution::generateParticles(), NodeUtils::nodePath(), Lattice2D::onChange(), SampleProvider::setBuilder(), SampleProvider::setParent(), and SampleProvider::setSample().

progeny()

std::vector< const INode * > INode::progeny ( ) const

inherited

Returns a vector of all descendants.

Definition at line 68 of file INode.cpp.

{
    std::vector<const INode*> result;
    result.push_back(this);
    for (const auto* child : getChildren()) {
        for (const auto* p : child->progeny())
            result.push_back(p);
    }
    return result;
}

References INode::getChildren().

Referenced by INode::createParameterTree(), and ParticleDistribution::generateParticles().

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regionOfInterest()

const RegionOfInterest * IDetector2D::regionOfInterest ( ) const

overridevirtualinherited

Returns region of interest if exists.

Implements IDetector.

Definition at line 43 of file IDetector2D.cpp.

{
    return m_region_of_interest.get();
}

References IDetector2D::m_region_of_interest.

Referenced by IDetector2D::IDetector2D(), OffSpecularConverter::addDetectorYAxis(), and RectangularDetector::regionOfInterestPixel().

registerChild()

void INode::registerChild ( INode *  node )

inherited

Definition at line 57 of file INode.cpp.

{
    ASSERT(node);
    node->setParent(this);
}

References ASSERT, and INode::setParent().

Referenced by Beam::Beam(), Crystal::Crystal(), IDetector::IDetector(), Instrument::Instrument(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), Particle::Particle(), ParticleDistribution::ParticleDistribution(), ParticleLayout::addAndRegisterAbstractParticle(), ParticleCoreShell::addAndRegisterCore(), MultiLayer::addAndRegisterInterface(), MultiLayer::addAndRegisterLayer(), ParticleCoreShell::addAndRegisterShell(), Layer::addLayout(), ParticleComposition::addParticlePointer(), ISimulation::initialize(), MesoCrystal::initialize(), Beam::operator=(), Instrument::operator=(), IParticle::rotate(), ParticleLayout::setAndRegisterInterferenceFunction(), ISimulation::setBackground(), InterferenceFunction1DLattice::setDecayFunction(), InterferenceFunction2DLattice::setDecayFunction(), Instrument::setDetector(), IDetector::setDetectorResolution(), Beam::setFootprintFactor(), Particle::setFormFactor(), InterferenceFunctionFinite3DLattice::setLattice(), InterferenceFunctionRadialParaCrystal::setProbabilityDistribution(), InterferenceFunction2DParaCrystal::setProbabilityDistributions(), ConvolutionDetectorResolution::setResolutionFunction(), IParticle::setRotation(), LayerInterface::setRoughness(), and InterferenceFunction2DSuperLattice::setSubstructureIFF().

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registerParameter()

RealParameter & IParametricComponent::registerParameter ( const std::string &  name, double *  parpointer  )

inherited

Definition at line 51 of file IParametricComponent.cpp.

{
    return m_pool->addParameter(
        new RealParameter(name, data, getName(), [&]() -> void { onChange(); }));
}

References IParametricComponent::getName(), IParametricComponent::m_pool, RealSpace::Particles::name(), and IParametricComponent::onChange().

Referenced by BasicLattice2D::BasicLattice2D(), Beam::Beam(), CylindersInBABuilder::CylindersInBABuilder(), DetectionProperties::DetectionProperties(), HexagonalLattice2D::HexagonalLattice2D(), IInterferenceFunction::IInterferenceFunction(), INode::INode(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), Lattice2D::Lattice2D(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleDistribution::ParticleDistribution(), PlainMultiLayerBySLDBuilder::PlainMultiLayerBySLDBuilder(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), ResonatorBuilder::ResonatorBuilder(), SquareLattice2D::SquareLattice2D(), TriangularRippleBuilder::TriangularRippleBuilder(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParametricComponent::registerVector(), ParticleLayout::registerWeight(), and Lattice2D::setRotationEnabled().

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registerVector()

void IParametricComponent::registerVector ( const std::string &  base_name, kvector_t *  p_vec, const std::string &  units = "nm"  )

inherited

Definition at line 57 of file IParametricComponent.cpp.

{
    registerParameter(XComponentName(base_name), &((*p_vec)[0])).setUnit(units);
    registerParameter(YComponentName(base_name), &((*p_vec)[1])).setUnit(units);
    registerParameter(ZComponentName(base_name), &((*p_vec)[2])).setUnit(units);
}

References ModelView::Utils::base_name(), IParametricComponent::registerParameter(), RealParameter::setUnit(), IParametricComponent::XComponentName(), IParametricComponent::YComponentName(), and IParametricComponent::ZComponentName().

Referenced by Beam::Beam(), DetectionProperties::DetectionProperties(), InterferenceFunctionTwin::InterferenceFunctionTwin(), MultiLayer::MultiLayer(), Lattice3D::initialize(), and IParticle::registerPosition().

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removeParameter()

void IParametricComponent::removeParameter ( const std::string &  name )

inherited

Definition at line 91 of file IParametricComponent.cpp.

{
    m_pool->removeParameter(name);
}

References IParametricComponent::m_pool, and RealSpace::Particles::name().

Referenced by IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParametricComponent::removeVector(), and Lattice2D::setRotationEnabled().

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removeVector()

void IParametricComponent::removeVector ( const std::string &  base_name )

inherited

Definition at line 96 of file IParametricComponent.cpp.

{
    removeParameter(XComponentName(base_name));
    removeParameter(YComponentName(base_name));
    removeParameter(ZComponentName(base_name));
}

References ModelView::Utils::base_name(), IParametricComponent::removeParameter(), IParametricComponent::XComponentName(), IParametricComponent::YComponentName(), and IParametricComponent::ZComponentName().

Referenced by IParticle::registerPosition().

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resetRegionOfInterest()

void IDetector2D::resetRegionOfInterest ( )

overridevirtualinherited

Resets region of interest making whole detector plane available for the simulation.

Implements IDetector.

Definition at line 54 of file IDetector2D.cpp.

{
    m_region_of_interest.reset();
    m_detector_mask.initMaskData(*this);
}

References DetectorMask::initMaskData(), IDetector2D::m_detector_mask, and IDetector2D::m_region_of_interest.

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setAnalyzerProperties()

void IDetector::setAnalyzerProperties ( const kvector_t  direction, double  efficiency, double  total_transmission  )

inherited

Sets the polarization analyzer characteristics of the detector.

Definition at line 99 of file IDetector.cpp.

{
    m_detection_properties.setAnalyzerProperties(direction, efficiency, total_transmission);
}

References IDetector::m_detection_properties, and DetectionProperties::setAnalyzerProperties().

Referenced by StandardSimulations::BasicGISAS00(), StandardSimulations::BasicPolarizedGISAS(), StandardSimulations::MaxiGISAS00(), StandardSimulations::MiniGISASPolarizationMM(), StandardSimulations::MiniGISASPolarizationMP(), StandardSimulations::MiniGISASPolarizationPM(), and StandardSimulations::MiniGISASPolarizationPP().

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setDataToDetectorMap()

void IDetector::setDataToDetectorMap ( OutputData< double > &  detectorMap, const std::vector< SimulationElement > &  elements  ) const

privateinherited

Definition at line 175 of file IDetector.cpp.

{
    if (elements.empty())
        return;
    iterate([&](const_iterator it) {
        detectorMap[it.roiIndex()] = elements[it.elementIndex()].intensity();
    });
}

References SimulationAreaIterator::elementIndex(), IDetector::iterate(), and SimulationAreaIterator::roiIndex().

Referenced by IDetector::createDetectorIntensity().

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setDetectorParameters()

void IDetector2D::setDetectorParameters ( size_t  n_x, double  x_min, double  x_max, size_t  n_y, double  y_min, double  y_max  )

inherited

Sets detector parameters using angle ranges.

Definition at line 35 of file IDetector2D.cpp.

{
    clear();
    addAxis(*createAxis(0, n_x, x_min, x_max));
    addAxis(*createAxis(1, n_y, y_min, y_max));
}

References IDetector::addAxis(), IDetector::clear(), and IDetector::createAxis().

Referenced by IsGISAXSDetector(), RectangularDetector::RectangularDetector(), SphericalDetector::SphericalDetector(), and ISimulation2D::setDetectorParameters().

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setDetectorResolution()

void IDetector::setDetectorResolution ( const IDetectorResolution &  p_detector_resolution )

inherited

Sets the detector resolution.

Definition at line 105 of file IDetector.cpp.

{
    m_detector_resolution.reset(p_detector_resolution.clone());
    registerChild(m_detector_resolution.get());
}

References IDetectorResolution::clone(), IDetector::m_detector_resolution, and INode::registerChild().

Referenced by IDetector::IDetector(), and IDetector::setResolutionFunction().

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setName()

void IParametricComponent::setName ( const std::string &  name )

inlineinherited

Definition at line 69 of file IParametricComponent.h.

{ m_name = name; }

References IParametricComponent::m_name, and RealSpace::Particles::name().

Referenced by BasicLattice2D::BasicLattice2D(), Beam::Beam(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), Crystal::Crystal(), DetectionProperties::DetectionProperties(), DistributionHandler::DistributionHandler(), FormFactorCoreShell::FormFactorCoreShell(), FormFactorCrystal::FormFactorCrystal(), FormFactorDecoratorMaterial::FormFactorDecoratorMaterial(), FormFactorDecoratorPositionFactor::FormFactorDecoratorPositionFactor(), FormFactorDecoratorRotation::FormFactorDecoratorRotation(), FormFactorWeighted::FormFactorWeighted(), HexagonalLattice2D::HexagonalLattice2D(), IDetector::IDetector(), INode::INode(), Instrument::Instrument(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunction3DLattice::InterferenceFunction3DLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), InterferenceFunctionFinite3DLattice::InterferenceFunctionFinite3DLattice(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionNone::InterferenceFunctionNone(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), ISampleBuilder::ISampleBuilder(), IsGISAXSDetector(), Lattice3D::Lattice3D(), Layer::Layer(), LayerInterface::LayerInterface(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleCoreShell::ParticleCoreShell(), ParticleDistribution::ParticleDistribution(), ParticleLayout::ParticleLayout(), RectangularDetector::RectangularDetector(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), SampleBuilderNode::SampleBuilderNode(), SphericalDetector::SphericalDetector(), SquareLattice2D::SquareLattice2D(), Layer::clone(), LayersWithAbsorptionBuilder::createSampleByIndex(), Basic2DParaCrystalBuilder::createSampleByIndex(), ParticleInVacuumBuilder::createSampleByIndex(), SimpleMagneticRotationBuilder::createSampleByIndex(), DepthProbeSimulation::initialize(), GISASSimulation::initialize(), OffSpecularSimulation::initialize(), SpecularSimulation::initialize(), SpecularDetector1D::initialize(), MesoCrystal::initialize(), Particle::initialize(), ParticleComposition::initialize(), Beam::operator=(), SampleBuilderNode::operator=(), SampleBuilderNode::reset(), and SampleBuilderNode::setSBN().

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setParameterValue()

void IParametricComponent::setParameterValue ( const std::string &  name, double  value  )

inherited

Definition at line 65 of file IParametricComponent.cpp.

{
    if (name.find('*') == std::string::npos && name.find('/') == std::string::npos) {
        m_pool->setParameterValue(name, value);
    } else {
        std::unique_ptr<ParameterPool> P_pool{createParameterTree()};
        if (name.find('*') != std::string::npos)
            P_pool->setMatchedParametersValue(name, value);
        else
            P_pool->setParameterValue(name, value);
    }
}

References IParametricComponent::createParameterTree(), IParametricComponent::m_pool, RealSpace::Particles::name(), and ParameterPool::setMatchedParametersValue().

Referenced by AsymRippleBuilder::buildSample(), and IParametricComponent::setVectorValue().

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setParent()

void INode::setParent ( const INode *  newParent )

virtualinherited

Reimplemented in SampleProvider.

Definition at line 79 of file INode.cpp.

{
    m_parent = newParent;
}

References INode::m_parent.

Referenced by INode::registerChild(), SampleProvider::setBuilder(), and SampleProvider::setParent().

setRegionOfInterest()

void IDetector2D::setRegionOfInterest ( double  xlow, double  ylow, double  xup, double  yup  )

inherited

Sets rectangular region of interest with lower left and upper right corners defined.

Definition at line 48 of file IDetector2D.cpp.

{
    m_region_of_interest = std::make_unique<RegionOfInterest>(*this, xlow, ylow, xup, yup);
    m_detector_mask.initMaskData(*this);
}

References DetectorMask::initMaskData(), IDetector2D::m_detector_mask, and IDetector2D::m_region_of_interest.

Referenced by DetectorItem::addMasksToDomain(), and ISimulation2D::setRegionOfInterest().

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setResolutionFunction()

void IDetector::setResolutionFunction ( const IResolutionFunction2D &  resFunc )

inherited

Definition at line 112 of file IDetector.cpp.

{
    ConvolutionDetectorResolution convFunc(resFunc);
    setDetectorResolution(convFunc);
}

References IDetector::setDetectorResolution().

Referenced by ISimulation::setDetectorResolutionFunction().

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setVectorValue()

void IParametricComponent::setVectorValue ( const std::string &  base_name, kvector_t  value  )

inherited

Definition at line 78 of file IParametricComponent.cpp.

{
    setParameterValue(XComponentName(base_name), value.x());
    setParameterValue(YComponentName(base_name), value.y());
    setParameterValue(ZComponentName(base_name), value.z());
}

References ModelView::Utils::base_name(), IParametricComponent::setParameterValue(), BasicVector3D< T >::x(), IParametricComponent::XComponentName(), BasicVector3D< T >::y(), IParametricComponent::YComponentName(), BasicVector3D< T >::z(), and IParametricComponent::ZComponentName().

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totalSize()

size_t IDetector::totalSize ( ) const

inherited

Returns total number of pixels.

Definition at line 88 of file IDetector.cpp.

{
    const size_t dim = dimension();
    if (dim == 0)
        return 0;
    size_t result = 1;
    for (size_t i_axis = 0; i_axis < dim; ++i_axis)
        result *= m_axes[i_axis]->size();
    return result;
}

References IDetector::dimension(), and IDetector::m_axes.

Referenced by SimulationArea::SimulationArea(), IDetector2D::getGlobalIndex(), indexOfSpecular(), RectangularDetector::indexOfSpecular(), and SphericalDetector::indexOfSpecular().

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transferToCPP()

virtual void ICloneable::transferToCPP ( )

inlinevirtualinherited

Used for Python overriding of clone (see swig/tweaks.py)

Definition at line 34 of file ICloneable.h.

treeToString()

std::string INode::treeToString ( ) const

virtualinherited

Returns multiline string representing tree structure below the node.

Definition at line 52 of file INode.cpp.

{
    return NodeUtils::nodeToString(this);
}

References NodeUtils::nodeToString().

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XComponentName()

std::string IParametricComponent::XComponentName ( const std::string &  base_name )

staticinherited

Definition at line 103 of file IParametricComponent.cpp.

{
    return base_name + "X";
}

References ModelView::Utils::base_name().

Referenced by Lattice3D::initialize(), IParticle::registerPosition(), IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().

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YComponentName()

std::string IParametricComponent::YComponentName ( const std::string &  base_name )

staticinherited

Definition at line 108 of file IParametricComponent.cpp.

{
    return base_name + "Y";
}

References ModelView::Utils::base_name().

Referenced by IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().

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ZComponentName()

std::string IParametricComponent::ZComponentName ( const std::string &  base_name )

staticinherited

Definition at line 113 of file IParametricComponent.cpp.

{
    return base_name + "Z";
}

References ModelView::Utils::base_name().

Referenced by IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().

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Member Data Documentation

m_axes

CloneableVector<IAxis> IDetector::m_axes

privateinherited

Definition at line 114 of file IDetector.h.

Referenced by IDetector::addAxis(), IDetector::axis(), IDetector::axisBinIndex(), IDetector::clear(), IDetector::dimension(), and IDetector::totalSize().

m_detection_properties

DetectionProperties IDetector::m_detection_properties

privateinherited

Definition at line 115 of file IDetector.h.

Referenced by IDetector::IDetector(), IDetector::getChildren(), and IDetector::setAnalyzerProperties().

m_detector_mask

DetectorMask IDetector2D::m_detector_mask

privateinherited

Definition at line 86 of file IDetector2D.h.

Referenced by IDetector2D::addMask(), IDetector2D::detectorMask(), IDetector2D::resetRegionOfInterest(), and IDetector2D::setRegionOfInterest().

m_detector_resolution

std::unique_ptr<IDetectorResolution> IDetector::m_detector_resolution

privateinherited

Definition at line 116 of file IDetector.h.

Referenced by IDetector::IDetector(), IDetector::applyDetectorResolution(), IDetector::createDetectorIntensity(), IDetector::detectorResolution(), IDetector::getChildren(), and IDetector::setDetectorResolution().

m_name

std::string IParametricComponent::m_name

privateinherited

Definition at line 73 of file IParametricComponent.h.

Referenced by IParametricComponent::getName(), and IParametricComponent::setName().

m_NP

const size_t INode::m_NP

protectedinherited

Definition at line 88 of file INode.h.

Referenced by INode::INode().

m_P

std::vector<double> INode::m_P

protectedinherited

Definition at line 89 of file INode.h.

Referenced by INode::INode(), and IFootprintFactor::setWidthRatio().

m_parent

const INode* INode::m_parent {nullptr}

privateinherited

Definition at line 83 of file INode.h.

Referenced by INode::displayName(), INode::parent(), and INode::setParent().

m_pool

std::unique_ptr<ParameterPool> IParametricComponent::m_pool

privateinherited

parameter pool (kind of pointer-to-implementation)

Definition at line 74 of file IParametricComponent.h.

Referenced by IParametricComponent::createParameterTree(), IParametricComponent::parameter(), IParametricComponent::parameterPool(), IParametricComponent::registerParameter(), IParametricComponent::removeParameter(), and IParametricComponent::setParameterValue().

m_region_of_interest

std::unique_ptr<RegionOfInterest> IDetector2D::m_region_of_interest

privateinherited

Definition at line 87 of file IDetector2D.h.

Referenced by IDetector2D::IDetector2D(), IDetector2D::regionOfInterest(), IDetector2D::resetRegionOfInterest(), and IDetector2D::setRegionOfInterest().

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The documentation for this class was generated from the following files:

• /home/www/ba/Device/Detector/IsGISAXSDetector.h
• /home/www/ba/Device/Detector/IsGISAXSDetector.cpp