BornAgain
1.19.0
Simulate and fit neutron and x-ray scattering at grazing incidence
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A roughness of interface between two layers. More...
Public Member Functions | |
LayerRoughness () | |
LayerRoughness (double sigma, double hurstParameter, double lateralCorrLength) | |
Constructor of layer roughness. More... | |
virtual void | accept (INodeVisitor *visitor) const |
Calls the INodeVisitor's visit method. More... | |
LayerRoughness * | clone () const |
Returns a clone of this ISampleNode object. More... | |
std::vector< const Material * > | containedMaterials () const |
Returns set of unique materials contained in this ISampleNode. More... | |
int | copyNumber (const INode *node) const |
Returns copyNumber of child, which takes into account existence of children with same name. More... | |
ParameterPool * | createParameterTree () const |
Creates new parameter pool, with all local parameters and those of its children. More... | |
std::string | displayName () const |
Returns display name, composed from the name of node and it's copy number. More... | |
virtual std::vector< const INode * > | getChildren () const |
Returns a vector of children. More... | |
double | getCorrFun (const kvector_t k) const |
Correlation function of the roughness profile. More... | |
double | getHurstParameter () const |
Returns hurst parameter. More... | |
double | getLatteralCorrLength () const |
Returns lateral correlation length. More... | |
const std::string & | getName () const |
double | getSigma () const |
Returns rms of roughness. More... | |
double | getSpectralFun (const kvector_t kvec) const |
Returns power spectral density of the surface roughness. More... | |
bool | isMagnetic () const |
Returns true if there is any magnetic material in this ISampleNode. More... | |
virtual const Material * | material () const |
Returns nullptr, unless overwritten to return a specific material. More... | |
virtual void | onChange () |
Action to be taken in inherited class when a parameter has changed. More... | |
RealParameter * | parameter (const std::string &name) const |
Returns parameter with given 'name'. More... | |
ParameterPool * | parameterPool () const |
Returns pointer to the parameter pool. More... | |
std::string | parametersToString () const |
Returns multiline string representing available parameters. More... | |
INode * | parent () |
const INode * | parent () const |
std::vector< const INode * > | progeny () const |
Returns a vector of all descendants. More... | |
void | registerChild (INode *node) |
RealParameter & | registerParameter (const std::string &name, double *parpointer) |
void | registerVector (const std::string &base_name, kvector_t *p_vec, const std::string &units="nm") |
void | removeParameter (const std::string &name) |
void | removeVector (const std::string &base_name) |
void | setHurstParameter (double hurstParameter) |
Sets hurst parameter. It describes how jagged the surface is. More... | |
void | setLatteralCorrLength (double lateralCorrLength) |
Sets lateral correlation length. More... | |
void | setName (const std::string &name) |
void | setParameterValue (const std::string &name, double value) |
virtual void | setParent (const INode *newParent) |
void | setSigma (double sigma) |
Sets rms of roughness. More... | |
void | setVectorValue (const std::string &base_name, kvector_t value) |
virtual void | transferToCPP () |
Used for Python overriding of clone (see swig/tweaks.py) More... | |
virtual std::string | treeToString () const |
Returns multiline string representing tree structure below the node. More... | |
Static Public Member Functions | |
static std::string | XComponentName (const std::string &base_name) |
static std::string | YComponentName (const std::string &base_name) |
static std::string | ZComponentName (const std::string &base_name) |
Protected Attributes | |
const size_t | m_NP |
std::vector< double > | m_P |
Private Attributes | |
double | m_hurstParameter |
Hurst parameter which describes how jagged the interface, 0<H<=1. More... | |
double | m_lateralCorrLength |
lateral correlation length of the roughness More... | |
std::string | m_name |
const INode * | m_parent {nullptr} |
std::unique_ptr< ParameterPool > | m_pool |
parameter pool (kind of pointer-to-implementation) More... | |
double | m_sigma |
rms of roughness More... | |
A roughness of interface between two layers.
Based on the article D.K.G. de Boer, Physical review B, Volume 51, Number 8, 15 February 1995 "X-ray reflection and transmission by rough surfaces"
Definition at line 28 of file LayerRoughness.h.
LayerRoughness::LayerRoughness | ( | double | sigma, |
double | hurstParameter, | ||
double | lateralCorrLength | ||
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Constructor of layer roughness.
sigma | rms of the roughness in nanometers |
hurstParameter | hurst parameter which describes how jagged the interface, dimensionless [0.0, 1.0], where 0.0 gives more spikes, 1.0 more smoothness |
lateralCorrLength | lateral correlation length of the roughness in nanometers |
Definition at line 24 of file LayerRoughness.cpp.
References m_hurstParameter, m_lateralCorrLength, m_sigma, IParametricComponent::registerParameter(), IParametricComponent::setName(), RealParameter::setNonnegative(), and RealParameter::setUnit().
LayerRoughness::LayerRoughness | ( | ) |
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inlinevirtual |
Calls the INodeVisitor's visit method.
Implements INode.
Definition at line 37 of file LayerRoughness.h.
References INodeVisitor::visit().
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inlinevirtual |
Returns a clone of this ISampleNode object.
Implements ISampleNode.
Definition at line 33 of file LayerRoughness.h.
References LayerRoughness(), m_hurstParameter, m_lateralCorrLength, and m_sigma.
Referenced by LayerInterface::setRoughness().
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inherited |
Returns set of unique materials contained in this ISampleNode.
Definition at line 26 of file ISampleNode.cpp.
References INode::getChildren(), and ISampleNode::material().
Referenced by MultiLayerUtils::ContainsCompatibleMaterials(), SampleToPython::initLabels(), and ISampleNode::isMagnetic().
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inherited |
Returns copyNumber of child, which takes into account existence of children with same name.
Definition at line 94 of file INode.cpp.
References INode::getChildren(), IParametricComponent::getName(), and INode::parent().
Referenced by INode::displayName().
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virtualinherited |
Creates new parameter pool, with all local parameters and those of its children.
Reimplemented from IParametricComponent.
Definition at line 126 of file INode.cpp.
References NodeUtils::nodePath(), INode::parent(), and INode::progeny().
Referenced by ISimulation::runSimulation(), DepthProbeSimulation::validateParametrization(), OffSpecularSimulation::validateParametrization(), and SpecularSimulation::validateParametrization().
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Returns display name, composed from the name of node and it's copy number.
Definition at line 115 of file INode.cpp.
References INode::copyNumber(), IParametricComponent::getName(), and INode::m_parent.
Referenced by NodeUtils::nodePath().
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virtualinherited |
Returns a vector of children.
Reimplemented in SampleProvider, IParticle, ParticleLayout, InterferenceFunctionFinite3DLattice, InterferenceFunctionFinite2DLattice, InterferenceFunction3DLattice, InterferenceFunction2DSuperLattice, InterferenceFunction2DParaCrystal, InterferenceFunction2DLattice, InterferenceFunction1DLattice, IDetector, Beam, ParticleDistribution, ParticleCoreShell, ParticleComposition, Particle, MesoCrystal, Crystal, MultiLayer, Layer, InterferenceFunctionRadialParaCrystal, LayerInterface, ConvolutionDetectorResolution, Instrument, and ISimulation.
Definition at line 63 of file INode.cpp.
Referenced by node_progeny::AllDescendantsOfType(), node_progeny::ChildNodesOfType(), ISampleNode::containedMaterials(), INode::copyNumber(), INode::progeny(), and NodeUtils::progenyPlus().
double LayerRoughness::getCorrFun | ( | const kvector_t | k | ) | const |
Correlation function of the roughness profile.
Definition at line 54 of file LayerRoughness.cpp.
References m_hurstParameter, m_lateralCorrLength, m_sigma, BasicVector3D< T >::x(), and BasicVector3D< T >::y().
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Returns hurst parameter.
Definition at line 52 of file LayerRoughness.h.
References m_hurstParameter.
Referenced by TransformFromDomain::isValidRoughness(), and TransformFromDomain::setRoughnessItem().
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Returns lateral correlation length.
Definition at line 60 of file LayerRoughness.h.
References m_lateralCorrLength.
Referenced by TransformFromDomain::isValidRoughness(), and TransformFromDomain::setRoughnessItem().
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inlineinherited |
Definition at line 70 of file IParametricComponent.h.
References IParametricComponent::m_name.
Referenced by Beam::Beam(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), IDetector::IDetector(), Instrument::Instrument(), IParametricComponent::IParametricComponent(), SampleBuilderNode::SampleBuilderNode(), Layer::clone(), INode::copyNumber(), IParametricComponent::createParameterTree(), IFormFactor::createSlicedFormFactor(), SampleToPython::defineInterferenceFunctions(), INode::displayName(), Beam::operator=(), SampleBuilderNode::operator=(), GUIObjectBuilder::populateInstrumentModel(), PyImportAssistant::populateModels(), GUIDomainSampleVisitor::populateSampleModel(), IParametricComponent::registerParameter(), IFormFactor::sliceFormFactor(), and GUIDomainSampleVisitor::visit().
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Returns rms of roughness.
Definition at line 47 of file LayerRoughness.h.
References m_sigma.
Referenced by MultiLayer::addLayerWithTopRoughness(), ProcessedSample::crossCorrSpectralFun(), TransformFromDomain::isValidRoughness(), and TransformFromDomain::setRoughnessItem().
double LayerRoughness::getSpectralFun | ( | const kvector_t | kvec | ) | const |
Returns power spectral density of the surface roughness.
Power spectral density of the surface roughness is a result of two-dimensional Fourier transform of the correlation function of the roughness profile.
Based on the article D.K.G. de Boer, Physical review B, Volume 51, Number 8, 15 February 1995 "X-ray reflection and transmission by rough surfaces"
Definition at line 43 of file LayerRoughness.cpp.
References m_hurstParameter, m_lateralCorrLength, M_PI, m_sigma, BasicVector3D< T >::x(), and BasicVector3D< T >::y().
Referenced by RoughMultiLayerComputation::compute(), and ProcessedSample::crossCorrSpectralFun().
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inherited |
Returns true if there is any magnetic material in this ISampleNode.
Definition at line 40 of file ISampleNode.cpp.
References ISampleNode::containedMaterials().
Referenced by ProcessedSample::initLayouts().
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inlinevirtualinherited |
Returns nullptr, unless overwritten to return a specific material.
Reimplemented in Particle, and Layer.
Definition at line 37 of file ISampleNode.h.
Referenced by ISampleNode::containedMaterials(), FormFactorCoreShell::setAmbientMaterial(), FormFactorCrystal::setAmbientMaterial(), FormFactorWeighted::setAmbientMaterial(), FormFactorDecoratorMaterial::setAmbientMaterial(), IFormFactorDecorator::setAmbientMaterial(), and FormFactorDecoratorMaterial::setMaterial().
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inlinevirtualinherited |
Action to be taken in inherited class when a parameter has changed.
Reimplemented in IProfileRipple, Lattice3D, InterferenceFunction3DLattice, InterferenceFunction2DLattice, FormFactorSphereLogNormalRadius, FormFactorSphereGaussianRadius, FormFactorGaussSphere, ISawtoothRipple, ICosineRipple, IProfileRectangularRipple, FormFactorTruncatedSpheroid, FormFactorTruncatedSphere, FormFactorTruncatedCube, FormFactorTetrahedron, FormFactorPyramid, FormFactorPrism6, FormFactorPrism3, FormFactorLongBoxLorentz, FormFactorLongBoxGauss, FormFactorIcosahedron, FormFactorHollowSphere, FormFactorHemiEllipsoid, FormFactorFullSpheroid, FormFactorFullSphere, FormFactorEllipsoidalCylinder, FormFactorDodecahedron, FormFactorCylinder, FormFactorCuboctahedron, FormFactorCone6, FormFactorCone, FormFactorCantellatedCube, FormFactorBox, FormFactorAnisoPyramid, and Lattice2D.
Definition at line 59 of file IParametricComponent.h.
Referenced by Lattice2D::onChange(), and IParametricComponent::registerParameter().
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inherited |
Returns parameter with given 'name'.
Definition at line 86 of file IParametricComponent.cpp.
References IParametricComponent::m_pool, and RealSpace::Particles::name().
Referenced by DepthProbeSimulation::initialize(), SpecularSimulation::initialize(), Lattice3D::initialize(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), IParticle::registerPosition(), Layer::registerThickness(), Lattice2D::setRotationEnabled(), and DistributionLogNormal::setUnits().
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inlineinherited |
Returns pointer to the parameter pool.
Definition at line 39 of file IParametricComponent.h.
References IParametricComponent::m_pool.
Referenced by INode::INode(), IParametricComponent::IParametricComponent(), pyfmt2::argumentList(), SampleBuilderNode::borrow_builder_parameters(), SampleBuilderNode::reset(), and IDistribution1D::setUnits().
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inherited |
Returns multiline string representing available parameters.
Definition at line 43 of file IParametricComponent.cpp.
References IParametricComponent::createParameterTree().
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inherited |
Definition at line 89 of file INode.cpp.
References INode::m_parent.
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Definition at line 84 of file INode.cpp.
References INode::m_parent.
Referenced by INode::copyNumber(), INode::createParameterTree(), ParticleDistribution::generateParticles(), NodeUtils::nodePath(), Lattice2D::onChange(), SampleProvider::setBuilder(), SampleProvider::setParent(), and SampleProvider::setSample().
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inherited |
Returns a vector of all descendants.
Definition at line 68 of file INode.cpp.
References INode::getChildren().
Referenced by INode::createParameterTree(), and ParticleDistribution::generateParticles().
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inherited |
Definition at line 57 of file INode.cpp.
References ASSERT, and INode::setParent().
Referenced by Beam::Beam(), Crystal::Crystal(), IDetector::IDetector(), Instrument::Instrument(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), Particle::Particle(), ParticleDistribution::ParticleDistribution(), ParticleLayout::addAndRegisterAbstractParticle(), ParticleCoreShell::addAndRegisterCore(), MultiLayer::addAndRegisterInterface(), MultiLayer::addAndRegisterLayer(), ParticleCoreShell::addAndRegisterShell(), Layer::addLayout(), ParticleComposition::addParticlePointer(), ISimulation::initialize(), MesoCrystal::initialize(), Beam::operator=(), Instrument::operator=(), IParticle::rotate(), ParticleLayout::setAndRegisterInterferenceFunction(), ISimulation::setBackground(), InterferenceFunction1DLattice::setDecayFunction(), InterferenceFunction2DLattice::setDecayFunction(), Instrument::setDetector(), IDetector::setDetectorResolution(), Beam::setFootprintFactor(), Particle::setFormFactor(), InterferenceFunctionFinite3DLattice::setLattice(), InterferenceFunctionRadialParaCrystal::setProbabilityDistribution(), InterferenceFunction2DParaCrystal::setProbabilityDistributions(), ConvolutionDetectorResolution::setResolutionFunction(), IParticle::setRotation(), LayerInterface::setRoughness(), and InterferenceFunction2DSuperLattice::setSubstructureIFF().
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Definition at line 51 of file IParametricComponent.cpp.
References IParametricComponent::getName(), IParametricComponent::m_pool, RealSpace::Particles::name(), and IParametricComponent::onChange().
Referenced by BasicLattice2D::BasicLattice2D(), Beam::Beam(), CylindersInBABuilder::CylindersInBABuilder(), DetectionProperties::DetectionProperties(), HexagonalLattice2D::HexagonalLattice2D(), IInterferenceFunction::IInterferenceFunction(), INode::INode(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), Lattice2D::Lattice2D(), LayerRoughness(), MultiLayer::MultiLayer(), ParticleDistribution::ParticleDistribution(), PlainMultiLayerBySLDBuilder::PlainMultiLayerBySLDBuilder(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), ResonatorBuilder::ResonatorBuilder(), SquareLattice2D::SquareLattice2D(), TriangularRippleBuilder::TriangularRippleBuilder(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParametricComponent::registerVector(), ParticleLayout::registerWeight(), and Lattice2D::setRotationEnabled().
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Definition at line 57 of file IParametricComponent.cpp.
References ModelView::Utils::base_name(), IParametricComponent::registerParameter(), RealParameter::setUnit(), IParametricComponent::XComponentName(), IParametricComponent::YComponentName(), and IParametricComponent::ZComponentName().
Referenced by Beam::Beam(), DetectionProperties::DetectionProperties(), InterferenceFunctionTwin::InterferenceFunctionTwin(), MultiLayer::MultiLayer(), Lattice3D::initialize(), and IParticle::registerPosition().
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Definition at line 91 of file IParametricComponent.cpp.
References IParametricComponent::m_pool, and RealSpace::Particles::name().
Referenced by IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParametricComponent::removeVector(), and Lattice2D::setRotationEnabled().
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Definition at line 96 of file IParametricComponent.cpp.
References ModelView::Utils::base_name(), IParametricComponent::removeParameter(), IParametricComponent::XComponentName(), IParametricComponent::YComponentName(), and IParametricComponent::ZComponentName().
Referenced by IParticle::registerPosition().
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Sets hurst parameter. It describes how jagged the surface is.
Definition at line 50 of file LayerRoughness.h.
References m_hurstParameter.
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Sets lateral correlation length.
Definition at line 55 of file LayerRoughness.h.
References m_lateralCorrLength.
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Definition at line 69 of file IParametricComponent.h.
References IParametricComponent::m_name, and RealSpace::Particles::name().
Referenced by BasicLattice2D::BasicLattice2D(), Beam::Beam(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), Crystal::Crystal(), DetectionProperties::DetectionProperties(), DistributionHandler::DistributionHandler(), FormFactorCoreShell::FormFactorCoreShell(), FormFactorCrystal::FormFactorCrystal(), FormFactorDecoratorMaterial::FormFactorDecoratorMaterial(), FormFactorDecoratorPositionFactor::FormFactorDecoratorPositionFactor(), FormFactorDecoratorRotation::FormFactorDecoratorRotation(), FormFactorWeighted::FormFactorWeighted(), HexagonalLattice2D::HexagonalLattice2D(), IDetector::IDetector(), INode::INode(), Instrument::Instrument(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunction3DLattice::InterferenceFunction3DLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), InterferenceFunctionFinite3DLattice::InterferenceFunctionFinite3DLattice(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionNone::InterferenceFunctionNone(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), ISampleBuilder::ISampleBuilder(), IsGISAXSDetector::IsGISAXSDetector(), Lattice3D::Lattice3D(), Layer::Layer(), LayerInterface::LayerInterface(), LayerRoughness(), MultiLayer::MultiLayer(), ParticleCoreShell::ParticleCoreShell(), ParticleDistribution::ParticleDistribution(), ParticleLayout::ParticleLayout(), RectangularDetector::RectangularDetector(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), SampleBuilderNode::SampleBuilderNode(), SphericalDetector::SphericalDetector(), SquareLattice2D::SquareLattice2D(), Layer::clone(), LayersWithAbsorptionBuilder::createSampleByIndex(), Basic2DParaCrystalBuilder::createSampleByIndex(), ParticleInVacuumBuilder::createSampleByIndex(), SimpleMagneticRotationBuilder::createSampleByIndex(), DepthProbeSimulation::initialize(), GISASSimulation::initialize(), OffSpecularSimulation::initialize(), SpecularSimulation::initialize(), SpecularDetector1D::initialize(), MesoCrystal::initialize(), Particle::initialize(), ParticleComposition::initialize(), Beam::operator=(), SampleBuilderNode::operator=(), SampleBuilderNode::reset(), and SampleBuilderNode::setSBN().
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Definition at line 65 of file IParametricComponent.cpp.
References IParametricComponent::createParameterTree(), IParametricComponent::m_pool, RealSpace::Particles::name(), and ParameterPool::setMatchedParametersValue().
Referenced by AsymRippleBuilder::buildSample(), and IParametricComponent::setVectorValue().
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virtualinherited |
Reimplemented in SampleProvider.
Definition at line 79 of file INode.cpp.
References INode::m_parent.
Referenced by INode::registerChild(), SampleProvider::setBuilder(), and SampleProvider::setParent().
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Definition at line 78 of file IParametricComponent.cpp.
References ModelView::Utils::base_name(), IParametricComponent::setParameterValue(), BasicVector3D< T >::x(), IParametricComponent::XComponentName(), BasicVector3D< T >::y(), IParametricComponent::YComponentName(), BasicVector3D< T >::z(), and IParametricComponent::ZComponentName().
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inlinevirtualinherited |
Used for Python overriding of clone (see swig/tweaks.py)
Definition at line 34 of file ICloneable.h.
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Returns multiline string representing tree structure below the node.
Definition at line 52 of file INode.cpp.
References NodeUtils::nodeToString().
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staticinherited |
Definition at line 103 of file IParametricComponent.cpp.
References ModelView::Utils::base_name().
Referenced by Lattice3D::initialize(), IParticle::registerPosition(), IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().
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Definition at line 108 of file IParametricComponent.cpp.
References ModelView::Utils::base_name().
Referenced by IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().
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Definition at line 113 of file IParametricComponent.cpp.
References ModelView::Utils::base_name().
Referenced by IParametricComponent::registerVector(), IParametricComponent::removeVector(), IParametricComponent::setVectorValue(), and VectorParameterTranslator::translate().
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Hurst parameter which describes how jagged the interface, 0<H<=1.
Definition at line 64 of file LayerRoughness.h.
Referenced by LayerRoughness(), clone(), getCorrFun(), getHurstParameter(), getSpectralFun(), and setHurstParameter().
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lateral correlation length of the roughness
Definition at line 65 of file LayerRoughness.h.
Referenced by LayerRoughness(), clone(), getCorrFun(), getLatteralCorrLength(), getSpectralFun(), and setLatteralCorrLength().
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Definition at line 73 of file IParametricComponent.h.
Referenced by IParametricComponent::getName(), and IParametricComponent::setName().
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protectedinherited |
Definition at line 88 of file INode.h.
Referenced by INode::INode().
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protectedinherited |
Definition at line 89 of file INode.h.
Referenced by INode::INode(), and IFootprintFactor::setWidthRatio().
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privateinherited |
Definition at line 83 of file INode.h.
Referenced by INode::displayName(), INode::parent(), and INode::setParent().
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parameter pool (kind of pointer-to-implementation)
Definition at line 74 of file IParametricComponent.h.
Referenced by IParametricComponent::createParameterTree(), IParametricComponent::parameter(), IParametricComponent::parameterPool(), IParametricComponent::registerParameter(), IParametricComponent::removeParameter(), and IParametricComponent::setParameterValue().
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rms of roughness
Definition at line 63 of file LayerRoughness.h.
Referenced by LayerRoughness(), clone(), getCorrFun(), getSigma(), getSpectralFun(), and setSigma().