FormFactorSphereGaussianRadius Class Reference

Inheritance diagram for FormFactorSphereGaussianRadius:

Collaboration diagram for FormFactorSphereGaussianRadius:

Public Member Functions
	FormFactorSphereGaussianRadius (const std::vector< double > P)
	FormFactorSphereGaussianRadius (double mean, double sigma)
FormFactorSphereGaussianRadius *	clone () const override final
void	accept (INodeVisitor *visitor) const override final
double	radialExtension () const override final
complex_t	evaluate_for_q (cvector_t q) const override final
void	setAmbientMaterial (const Material &) override
complex_t	evaluate (const WavevectorInfo &wavevectors) const override
Eigen::Matrix2cd	evaluatePol (const WavevectorInfo &wavevectors) const override
virtual double	bottomZ (const IRotation &rotation) const override
virtual double	topZ (const IRotation &rotation) const override
IFormFactor *	createSlicedFormFactor (ZLimits limits, const IRotation &rot, kvector_t translation) const
virtual double	volume () const
virtual void	setSpecularInfo (std::unique_ptr< const ILayerRTCoefficients >, std::unique_ptr< const ILayerRTCoefficients >)
virtual const Material *	material () const
std::vector< const Material * >	containedMaterials () const
virtual void	transferToCPP ()
virtual std::string	treeToString () const
void	registerChild (INode *node)
virtual std::vector< const INode * >	getChildren () const
virtual void	setParent (const INode *newParent)
const INode *	parent () const
INode *	parent ()
int	copyNumber (const INode *node) const
std::string	displayName () const
ParameterPool *	createParameterTree () const
ParameterPool *	parameterPool () const
std::string	parametersToString () const
RealParameter &	registerParameter (const std::string &name, double *parpointer)
void	registerVector (const std::string &base_name, kvector_t *p_vec, const std::string &units="nm")
void	setParameterValue (const std::string &name, double value)
void	setVectorValue (const std::string &base_name, kvector_t value)
RealParameter *	parameter (const std::string &name) const
void	removeParameter (const std::string &name)
void	removeVector (const std::string &base_name)
void	setName (const std::string &name)
const std::string &	getName () const

Static Public Member Functions
static std::string	XComponentName (const std::string &base_name)
static std::string	YComponentName (const std::string &base_name)
static std::string	ZComponentName (const std::string &base_name)

Protected Member Functions
void	onChange () override final
bool	canSliceAnalytically (const IRotation &rot) const override
virtual Eigen::Matrix2cd	evaluate_for_q_pol (cvector_t q) const
SlicingEffects	computeSlicingEffects (ZLimits limits, const kvector_t &position, double height) const
virtual IFormFactor *	sliceFormFactor (ZLimits limits, const IRotation &rot, kvector_t translation) const

Static Protected Member Functions
static double	BottomZ (const std::vector< kvector_t > &vertices, const IRotation &rotation)
static double	TopZ (const std::vector< kvector_t > &vertices, const IRotation &rotation)

Protected Attributes
std::unique_ptr< IShape >	mP_shape
const size_t	m_NP
std::vector< double >	m_P

Private Member Functions
double	calculateMeanR3 () const

Private Attributes
const double &	m_mean
const double &	m_sigma
double	m_mean_r3
const INode *	m_parent {nullptr}
std::string	m_name
std::unique_ptr< ParameterPool >	m_pool

Detailed Description

A sphere with gaussian radius distribution.

Definition at line 24 of file FormFactorSphereGaussianRadius.h.

Constructor & Destructor Documentation

FormFactorSphereGaussianRadius() [1/2]

FormFactorSphereGaussianRadius::FormFactorSphereGaussianRadius

(

const std::vector< double >

P

)

Definition at line 20 of file FormFactorSphereGaussianRadius.cpp.

    : IFormFactorBorn({"FormFactorSphereGaussianRadius",
                       "class_tooltip",
                       {{"MeanRadius", "nm", "para_tooltip", 0, +INF, 0},
                        {"SigmaRadius", "nm", "para_tooltip", 0, +INF, 0}}},
                      P),
      m_mean(m_P[0]), m_sigma(m_P[1])
{
    m_mean_r3 = calculateMeanR3();
    onChange();
}

References INF.

Referenced by clone().

FormFactorSphereGaussianRadius() [2/2]

FormFactorSphereGaussianRadius::FormFactorSphereGaussianRadius	(	double	mean,
		double	sigma
	)

Definition at line 32 of file FormFactorSphereGaussianRadius.cpp.

    : FormFactorSphereGaussianRadius(std::vector<double>{mean, sigma})
{
}

Member Function Documentation

clone()

FormFactorSphereGaussianRadius* FormFactorSphereGaussianRadius::clone ( ) const

inlinefinaloverridevirtual

Returns a clone of this ISample object.

Implements IFormFactorBorn.

Definition at line 30 of file FormFactorSphereGaussianRadius.h.

    {
        return new FormFactorSphereGaussianRadius(m_mean, m_sigma);
    }

References FormFactorSphereGaussianRadius(), m_mean, and m_sigma.

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accept()

void FormFactorSphereGaussianRadius::accept ( INodeVisitor *  visitor ) const

inlinefinaloverridevirtual

Calls the INodeVisitor's visit method.

Implements INode.

Definition at line 35 of file FormFactorSphereGaussianRadius.h.

{ visitor->visit(this); }

radialExtension()

double FormFactorSphereGaussianRadius::radialExtension ( ) const

inlinefinaloverridevirtual

Returns the (approximate in some cases) radial size of the particle of this form factor's shape.

This is used for SSCA calculations

Implements IFormFactor.

Definition at line 37 of file FormFactorSphereGaussianRadius.h.

{ return m_mean; }

References m_mean.

evaluate_for_q()

complex_t FormFactorSphereGaussianRadius::evaluate_for_q ( cvector_t  q ) const

finaloverridevirtual

Returns scattering amplitude for complex scattering wavevector q=k_i-k_f.

This method is public only for convenience of plotting form factors in Python.

Implements IFormFactorBorn.

Definition at line 37 of file FormFactorSphereGaussianRadius.cpp.

{
    double q2 = std::norm(q.x()) + std::norm(q.y()) + std::norm(q.z());
    double dw = std::exp(-q2 * m_sigma * m_sigma / 2.0);
    return dw * exp_I(q.z() * m_mean_r3) * someff::ffSphere(q, m_mean_r3);
    // TODO: don't center at bottom; revise mesocrystal1.py
}

References exp_I(), someff::ffSphere(), m_mean_r3, m_sigma, BasicVector3D< T >::x(), BasicVector3D< T >::y(), and BasicVector3D< T >::z().

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onChange()

void FormFactorSphereGaussianRadius::onChange ( )

finaloverrideprotectedvirtual

Action to be taken in inherited class when a parameter has changed.

Reimplemented from IParameterized.

Definition at line 45 of file FormFactorSphereGaussianRadius.cpp.

{
    mP_shape = std::make_unique<TruncatedEllipsoid>(m_mean, m_mean, m_mean, 2.0 * m_mean, 0.0);
}

References m_mean, and IFormFactorBorn::mP_shape.

calculateMeanR3()

double FormFactorSphereGaussianRadius::calculateMeanR3 ( ) const

private

Definition at line 50 of file FormFactorSphereGaussianRadius.cpp.

{
    return std::pow(m_mean * (m_mean * m_mean + 3.0 * m_sigma * m_sigma), 1.0 / 3.0);
}

References m_mean, and m_sigma.

setAmbientMaterial()

void IFormFactorBorn::setAmbientMaterial ( const Material &  )

inlineoverridevirtualinherited

Passes the material in which this particle is embedded.

Implements IFormFactor.

Definition at line 40 of file IFormFactorBorn.h.

{}

evaluate()

complex_t IFormFactorBorn::evaluate ( const WavevectorInfo &  wavevectors ) const

overridevirtualinherited

Returns scattering amplitude for complex wavevectors ki, kf.

Implements IFormFactor.

Definition at line 31 of file IFormFactorBorn.cpp.

{
    return evaluate_for_q(wavevectors.getQ());
}

References IFormFactorBorn::evaluate_for_q(), and WavevectorInfo::getQ().

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evaluatePol()

Eigen::Matrix2cd IFormFactorBorn::evaluatePol ( const WavevectorInfo &  wavevectors ) const

overridevirtualinherited

Returns scattering amplitude for matrix interactions.

Reimplemented from IFormFactor.

Definition at line 36 of file IFormFactorBorn.cpp.

{
    return evaluate_for_q_pol(wavevectors.getQ());
}

References IFormFactorBorn::evaluate_for_q_pol(), and WavevectorInfo::getQ().

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bottomZ()

double IFormFactorBorn::bottomZ ( const IRotation &  rotation ) const

overridevirtualinherited

Returns the z-coordinate of the lowest point in this shape after a given rotation.

Implements IFormFactor.

Reimplemented in IFormFactorPrism, IFormFactorPolyhedron, FormFactorFullSphere, and FormFactorDot.

Definition at line 41 of file IFormFactorBorn.cpp.

{
    if (!mP_shape)
        return 0;
    return BottomZ(mP_shape->vertices(), rotation);
}

References IFormFactorBorn::BottomZ(), and IFormFactorBorn::mP_shape.

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topZ()

double IFormFactorBorn::topZ ( const IRotation &  rotation ) const

overridevirtualinherited

Returns the z-coordinate of the lowest point in this shape after a given rotation.

Implements IFormFactor.

Reimplemented in IFormFactorPrism, IFormFactorPolyhedron, FormFactorFullSphere, and FormFactorDot.

Definition at line 48 of file IFormFactorBorn.cpp.

{
    if (!mP_shape)
        return 0;
    return TopZ(mP_shape->vertices(), rotation);
}

References IFormFactorBorn::mP_shape, and IFormFactorBorn::TopZ().

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canSliceAnalytically()

bool IFormFactorBorn::canSliceAnalytically ( const IRotation &  rot ) const

overrideprotectedvirtualinherited

Default implementation only allows rotations along z-axis.

Reimplemented from IFormFactor.

Definition at line 55 of file IFormFactorBorn.cpp.

{
    if (rot.zInvariant())
        return true;
    return false;
}

References IRotation::zInvariant().

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evaluate_for_q_pol()

Eigen::Matrix2cd IFormFactorBorn::evaluate_for_q_pol ( cvector_t  q ) const

protectedvirtualinherited

Returns scattering amplitude for complex scattering wavevector q=k_i-k_f in case of matrix interactions.

Default implementation calls evaluate_for_q(q) and multiplies with the unit matrix.

Definition at line 62 of file IFormFactorBorn.cpp.

{
    return evaluate_for_q(q) * Eigen::Matrix2cd::Identity();
}

References IFormFactorBorn::evaluate_for_q().

Referenced by IFormFactorBorn::evaluatePol().

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computeSlicingEffects()

SlicingEffects IFormFactorBorn::computeSlicingEffects ( ZLimits  limits, const kvector_t &  position, double  height  ) const

protectedinherited

Helper method for slicing.

Definition at line 67 of file IFormFactorBorn.cpp.

{
    kvector_t new_position(position);
    double z_bottom = position.z();
    double z_top = position.z() + height;
    OneSidedLimit lower_limit = limits.lowerLimit();
    OneSidedLimit upper_limit = limits.upperLimit();
    if (!upper_limit.m_limitless && !lower_limit.m_limitless
        && lower_limit.m_value > upper_limit.m_value)
        throw std::runtime_error(getName()
                                 + "::sliceFormFactor error: "
                                   "upperlimit < lowerlimit.");
    double dz_top = upper_limit.m_limitless ? -1 : z_top - upper_limit.m_value;
    double dz_bottom = lower_limit.m_limitless ? -1 : lower_limit.m_value - z_bottom;
    if (dz_top < 0 && dz_bottom < 0)
        throw std::runtime_error(getName()
                                 + "::sliceFormFactor error: "
                                   "shape didn't need to be sliced.");
    if (dz_bottom > height)
        throw std::runtime_error(getName()
                                 + "::sliceFormFactor error: "
                                   "interface outside shape.");
    if (dz_top > height)
        throw std::runtime_error(getName()
                                 + "::sliceFormFactor error: "
                                   "interface outside shape.");
    if (dz_bottom < 0)
        dz_bottom = 0;
    if (dz_top < 0)
        dz_top = 0;
    if (dz_bottom > 0)
        new_position.setZ(lower_limit.m_value);
    return {new_position, dz_bottom, dz_top};
}

References IParameterized::getName(), anonymous_namespace{BoxCompositionBuilder.cpp}::height, ZLimits::lowerLimit(), OneSidedLimit::m_limitless, OneSidedLimit::m_value, BasicVector3D< T >::setZ(), ZLimits::upperLimit(), and BasicVector3D< T >::z().

Referenced by FormFactorAnisoPyramid::sliceFormFactor(), FormFactorBox::sliceFormFactor(), FormFactorCone::sliceFormFactor(), FormFactorCone6::sliceFormFactor(), FormFactorCuboctahedron::sliceFormFactor(), FormFactorCylinder::sliceFormFactor(), FormFactorEllipsoidalCylinder::sliceFormFactor(), FormFactorFullSphere::sliceFormFactor(), FormFactorFullSpheroid::sliceFormFactor(), FormFactorLongBoxGauss::sliceFormFactor(), FormFactorLongBoxLorentz::sliceFormFactor(), FormFactorPrism3::sliceFormFactor(), FormFactorPrism6::sliceFormFactor(), FormFactorPyramid::sliceFormFactor(), FormFactorTetrahedron::sliceFormFactor(), FormFactorTruncatedSphere::sliceFormFactor(), and FormFactorTruncatedSpheroid::sliceFormFactor().

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BottomZ()

double IFormFactorBorn::BottomZ ( const std::vector< kvector_t > &  vertices, const IRotation &  rotation  )

staticprotectedinherited

Calculates the z-coordinate of the lowest vertex after rotation.

Definition at line 103 of file IFormFactorBorn.cpp.

{
    ASSERT(vertices.size());
    return algo::min_value(
        vertices.begin(), vertices.end(),
        [&](const kvector_t& vertex) -> double { return rotation.transformed(vertex).z(); });
}

References ASSERT, and algo::min_value().

Referenced by IFormFactorBorn::bottomZ(), IFormFactorPolyhedron::bottomZ(), and IFormFactorPrism::bottomZ().

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TopZ()

double IFormFactorBorn::TopZ ( const std::vector< kvector_t > &  vertices, const IRotation &  rotation  )

staticprotectedinherited

Calculates the z-coordinate of the highest vertex after rotation.

Definition at line 111 of file IFormFactorBorn.cpp.

{
    ASSERT(vertices.size());
    return algo::max_value(
        vertices.begin(), vertices.end(),
        [&](const kvector_t& vertex) -> double { return rotation.transformed(vertex).z(); });
}

References ASSERT, and algo::max_value().

Referenced by IFormFactorBorn::topZ(), IFormFactorPolyhedron::topZ(), and IFormFactorPrism::topZ().

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createSlicedFormFactor()

IFormFactor * IFormFactor::createSlicedFormFactor ( ZLimits  limits, const IRotation &  rot, kvector_t  translation  ) const

inherited

Creates a (possibly sliced) form factor with the given rotation and translation.

Definition at line 35 of file IFormFactor.cpp.

{
    if (ShapeIsContainedInLimits(*this, limits, rot, translation))
        return createTransformedFormFactor(*this, rot, translation);
    if (ShapeOutsideLimits(*this, limits, rot, translation))
        return nullptr;
    if (canSliceAnalytically(rot))
        return sliceFormFactor(limits, rot, translation);
    throw std::runtime_error(getName()
                             + "::createSlicedFormFactor error: not supported for "
                               "the given rotation!");
}

References IFormFactor::canSliceAnalytically(), createTransformedFormFactor(), IParameterized::getName(), anonymous_namespace{IFormFactor.cpp}::ShapeIsContainedInLimits(), anonymous_namespace{IFormFactor.cpp}::ShapeOutsideLimits(), and IFormFactor::sliceFormFactor().

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volume()

double IFormFactor::volume ( ) const

virtualinherited

Returns the total volume of the particle of this form factor's shape.

Reimplemented in FormFactorCrystal, IFormFactorPolyhedron, FormFactorBox, IFormFactorDecorator, FormFactorDWBAPol, FormFactorDWBA, FormFactorBAPol, and IFormFactorPrism.

Definition at line 56 of file IFormFactor.cpp.

{
    auto zero_wavevectors = WavevectorInfo::GetZeroQ();
    return std::abs(evaluate(zero_wavevectors));
}

References IFormFactor::evaluate(), and WavevectorInfo::GetZeroQ().

Referenced by IFormFactorDecorator::volume(), and FormFactorCrystal::volume().

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setSpecularInfo()

void IFormFactor::setSpecularInfo ( std::unique_ptr< const ILayerRTCoefficients >  , std::unique_ptr< const ILayerRTCoefficients >    )

virtualinherited

Sets reflection/transmission info.

Reimplemented in FormFactorDWBAPol, and FormFactorDWBA.

Definition at line 62 of file IFormFactor.cpp.

{
}

sliceFormFactor()

IFormFactor * IFormFactor::sliceFormFactor ( ZLimits  limits, const IRotation &  rot, kvector_t  translation  ) const

protectedvirtualinherited

Actually slices the form factor or throws an exception.

Reimplemented in FormFactorTruncatedSpheroid, FormFactorTruncatedSphere, FormFactorTetrahedron, FormFactorPyramid, FormFactorPrism6, FormFactorPrism3, FormFactorLongBoxLorentz, FormFactorLongBoxGauss, FormFactorFullSpheroid, FormFactorFullSphere, FormFactorEllipsoidalCylinder, FormFactorCylinder, FormFactorCuboctahedron, FormFactorCone6, FormFactorCone, FormFactorBox, and FormFactorAnisoPyramid.

Definition at line 72 of file IFormFactor.cpp.

{
    throw std::runtime_error(getName() + "::sliceFormFactor error: not implemented!");
}

References IParameterized::getName().

Referenced by IFormFactor::createSlicedFormFactor().

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material()

virtual const Material* ISample::material ( ) const

inlinevirtualinherited

Returns nullptr, unless overwritten to return a specific material.

Reimplemented in Particle, and Layer.

Definition at line 37 of file ISample.h.

{ return nullptr; }

Referenced by ISample::containedMaterials(), FormFactorCrystal::setAmbientMaterial(), FormFactorBAPol::setAmbientMaterial(), FormFactorDecoratorMaterial::setAmbientMaterial(), FormFactorDWBA::setAmbientMaterial(), FormFactorDWBAPol::setAmbientMaterial(), IFormFactorDecorator::setAmbientMaterial(), FormFactorCoreShell::setAmbientMaterial(), FormFactorWeighted::setAmbientMaterial(), and FormFactorDecoratorMaterial::setMaterial().

containedMaterials()

std::vector< const Material * > ISample::containedMaterials ( ) const

inherited

Returns set of unique materials contained in this ISample.

Definition at line 23 of file ISample.cpp.

{
    std::vector<const Material*> result;
    if (const Material* p_material = material())
        result.push_back(p_material);
    for (auto child : getChildren()) {
        if (const ISample* sample = dynamic_cast<const ISample*>(child)) {
            for (const Material* p_material : sample->containedMaterials())
                result.push_back(p_material);
        }
    }
    return result;
}

References INode::getChildren(), and ISample::material().

Referenced by MultiLayerUtils::ContainsCompatibleMaterials(), anonymous_namespace{ProcessedSample.cpp}::ContainsMagneticMaterial(), and SampleToPython::initLabels().

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transferToCPP()

virtual void ICloneable::transferToCPP ( )

inlinevirtualinherited

Used for Python overriding of clone (see swig/tweaks.py)

Definition at line 34 of file ICloneable.h.

treeToString()

std::string INode::treeToString ( ) const

virtualinherited

Returns multiline string representing tree structure below the node.

Definition at line 53 of file INode.cpp.

{
    return NodeUtils::nodeToString(*this);
}

References NodeUtils::nodeToString().

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registerChild()

void INode::registerChild ( INode *  node )

inherited

Definition at line 58 of file INode.cpp.

{
    ASSERT(node);
    node->setParent(this);
}

References ASSERT, and INode::setParent().

Referenced by ParticleLayout::addAndRegisterAbstractParticle(), ParticleCoreShell::addAndRegisterCore(), MultiLayer::addAndRegisterInterface(), MultiLayer::addAndRegisterLayer(), ParticleCoreShell::addAndRegisterShell(), Layer::addLayout(), ParticleComposition::addParticlePointer(), Beam::Beam(), Crystal::Crystal(), IDetector::IDetector(), Simulation::initialize(), MesoCrystal::initialize(), Instrument::Instrument(), Beam::operator=(), Instrument::operator=(), Particle::Particle(), ParticleDistribution::ParticleDistribution(), IParticle::rotate(), ParticleLayout::setAndRegisterInterferenceFunction(), Simulation::setBackground(), InterferenceFunction1DLattice::setDecayFunction(), InterferenceFunction2DLattice::setDecayFunction(), Instrument::setDetector(), IDetector::setDetectorResolution(), Beam::setFootprintFactor(), Particle::setFormFactor(), InterferenceFunctionFinite3DLattice::setLattice(), InterferenceFunction2DLattice::setLattice(), InterferenceFunction2DParaCrystal::setLattice(), InterferenceFunction2DSuperLattice::setLattice(), InterferenceFunctionFinite2DLattice::setLattice(), InterferenceFunctionRadialParaCrystal::setProbabilityDistribution(), InterferenceFunction2DParaCrystal::setProbabilityDistributions(), ConvolutionDetectorResolution::setResolutionFunction(), IParticle::setRotation(), LayerInterface::setRoughness(), and InterferenceFunction2DSuperLattice::setSubstructureIFF().

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getChildren()

std::vector< const INode * > INode::getChildren ( ) const

virtualinherited

Returns a vector of children (const).

Reimplemented in ParticleDistribution, ParticleCoreShell, ParticleComposition, Particle, MesoCrystal, Crystal, Layer, InterferenceFunctionRadialParaCrystal, InterferenceFunctionFinite3DLattice, InterferenceFunctionFinite2DLattice, InterferenceFunction3DLattice, InterferenceFunction2DSuperLattice, InterferenceFunction2DParaCrystal, InterferenceFunction2DLattice, InterferenceFunction1DLattice, SampleProvider, IParticle, IDetector, Beam, MultiLayer, ParticleLayout, LayerInterface, ConvolutionDetectorResolution, Instrument, and Simulation.

Definition at line 64 of file INode.cpp.

{
    return {};
}

Referenced by INodeUtils::AllDescendantsOfType(), INodeUtils::ChildNodesOfType(), ISample::containedMaterials(), INode::copyNumber(), PostorderStrategy::first(), PreorderStrategy::next(), and PostorderStrategy::next().

setParent()

void INode::setParent ( const INode *  newParent )

virtualinherited

Reimplemented in SampleProvider.

Definition at line 69 of file INode.cpp.

{
    m_parent = newParent;
}

References INode::m_parent.

Referenced by INode::registerChild(), SampleProvider::setBuilder(), and SampleProvider::setParent().

parent() [1/2]

const INode * INode::parent ( ) const

inherited

Definition at line 74 of file INode.cpp.

{
    return m_parent;
}

References INode::m_parent.

Referenced by INode::copyNumber(), INode::createParameterTree(), NodeUtils::nodePath(), Lattice2D::onChange(), SampleProvider::setBuilder(), SampleProvider::setParent(), and SampleProvider::setSample().

parent() [2/2]

INode * INode::parent ( )

inherited

Definition at line 79 of file INode.cpp.

{
    return const_cast<INode*>(m_parent);
}

References INode::m_parent.

copyNumber()

int INode::copyNumber ( const INode *  node ) const

inherited

Returns copyNumber of child, which takes into account existence of children with same name.

Definition at line 84 of file INode.cpp.

{
    if (node->parent() != this)
        return -1;
 
    int result(-1), count(0);
    for (auto child : getChildren()) {
 
        if (child == nullptr)
            throw std::runtime_error("INode::copyNumber() -> Error. Nullptr as child.");
 
        if (child == node)
            result = count;
 
        if (child->getName() == node->getName())
            ++count;
    }
 
    return count > 1 ? result : -1;
}

References INode::getChildren(), IParameterized::getName(), and INode::parent().

Referenced by INode::displayName().

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displayName()

std::string INode::displayName ( ) const

inherited

Returns display name, composed from the name of node and it's copy number.

Definition at line 105 of file INode.cpp.

{
    std::string result = getName();
    if (m_parent) {
        int index = m_parent->copyNumber(this);
        if (index >= 0)
            result = result + std::to_string(index);
    }
    return result;
}

References INode::copyNumber(), IParameterized::getName(), and INode::m_parent.

Referenced by NodeUtils::nodePath(), and anonymous_namespace{NodeUtils.cpp}::nodeString().

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createParameterTree()

ParameterPool * INode::createParameterTree ( ) const

virtualinherited

Creates new parameter pool, with all local parameters and those of its children.

Reimplemented from IParameterized.

Definition at line 116 of file INode.cpp.

{
    std::unique_ptr<ParameterPool> result(new ParameterPool);
 
    NodeIterator<PreorderStrategy> it(this);
    it.first();
    while (!it.isDone()) {
        const INode* child = it.getCurrent();
        const std::string path = NodeUtils::nodePath(*child, this->parent()) + "/";
        child->parameterPool()->copyToExternalPool(path, result.get());
        it.next();
    }
 
    return result.release();
}

References ParameterPool::copyToExternalPool(), NodeIterator< Strategy >::first(), NodeIterator< Strategy >::getCurrent(), NodeIterator< Strategy >::isDone(), NodeIterator< Strategy >::next(), NodeUtils::nodePath(), IParameterized::parameterPool(), and INode::parent().

Referenced by ParticleDistribution::generateParticles(), Simulation::runSimulation(), DepthProbeSimulation::validateParametrization(), OffSpecSimulation::validateParametrization(), and SpecularSimulation::validateParametrization().

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parameterPool()

ParameterPool* IParameterized::parameterPool ( ) const

inlineinherited

Returns pointer to the parameter pool.

Definition at line 38 of file IParameterized.h.

{ return m_pool.get(); } // has non-const usages!

References IParameterized::m_pool.

Referenced by pyfmt2::argumentList(), SampleBuilderNode::borrow_builder_parameters(), INode::createParameterTree(), INode::INode(), IParameterized::IParameterized(), anonymous_namespace{NodeUtils.cpp}::poolToString(), SampleBuilderNode::reset(), and IDistribution1D::setUnits().

parametersToString()

std::string IParameterized::parametersToString ( ) const

inherited

Returns multiline string representing available parameters.

Definition at line 40 of file IParameterized.cpp.

{
    std::ostringstream result;
    std::unique_ptr<ParameterPool> P_pool(createParameterTree());
    result << *P_pool << "\n";
    return result.str();
}

References IParameterized::createParameterTree().

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registerParameter()

RealParameter & IParameterized::registerParameter ( const std::string &  name, double *  parpointer  )

inherited

Definition at line 48 of file IParameterized.cpp.

{
    return m_pool->addParameter(
        new RealParameter(name, data, getName(), [&]() -> void { onChange(); }));
}

References IParameterized::getName(), IParameterized::m_pool, and IParameterized::onChange().

Referenced by BasicLattice::BasicLattice(), Beam::Beam(), CylindersInBABuilder::CylindersInBABuilder(), DetectionProperties::DetectionProperties(), HexagonalLattice::HexagonalLattice(), IInterferenceFunction::IInterferenceFunction(), INode::INode(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), Lattice2D::Lattice2D(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleDistribution::ParticleDistribution(), PlainMultiLayerBySLDBuilder::PlainMultiLayerBySLDBuilder(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParameterized::registerVector(), ParticleLayout::registerWeight(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), ResonatorBuilder::ResonatorBuilder(), Lattice2D::setRotationEnabled(), SquareLattice::SquareLattice(), and TriangularRippleBuilder::TriangularRippleBuilder().

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registerVector()

void IParameterized::registerVector ( const std::string &  base_name, kvector_t *  p_vec, const std::string &  units = "nm"  )

inherited

Definition at line 54 of file IParameterized.cpp.

{
    registerParameter(XComponentName(base_name), &((*p_vec)[0])).setUnit(units);
    registerParameter(YComponentName(base_name), &((*p_vec)[1])).setUnit(units);
    registerParameter(ZComponentName(base_name), &((*p_vec)[2])).setUnit(units);
}

References IParameterized::registerParameter(), RealParameter::setUnit(), IParameterized::XComponentName(), IParameterized::YComponentName(), and IParameterized::ZComponentName().

Referenced by Beam::Beam(), DetectionProperties::DetectionProperties(), InterferenceFunctionTwin::InterferenceFunctionTwin(), MultiLayer::MultiLayer(), Lattice::registerBasisVectors(), and IParticle::registerPosition().

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setParameterValue()

void IParameterized::setParameterValue ( const std::string &  name, double  value  )

inherited

Definition at line 62 of file IParameterized.cpp.

{
    if (name.find('*') == std::string::npos && name.find('/') == std::string::npos) {
        m_pool->setParameterValue(name, value);
    } else {
        std::unique_ptr<ParameterPool> P_pool{createParameterTree()};
        if (name.find('*') != std::string::npos)
            P_pool->setMatchedParametersValue(name, value);
        else
            P_pool->setParameterValue(name, value);
    }
}

References IParameterized::createParameterTree(), IParameterized::m_pool, and ParameterPool::setMatchedParametersValue().

Referenced by AsymRippleBuilder::buildSample(), and IParameterized::setVectorValue().

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setVectorValue()

void IParameterized::setVectorValue ( const std::string &  base_name, kvector_t  value  )

inherited

Definition at line 75 of file IParameterized.cpp.

{
    setParameterValue(XComponentName(base_name), value.x());
    setParameterValue(YComponentName(base_name), value.y());
    setParameterValue(ZComponentName(base_name), value.z());
}

References IParameterized::setParameterValue(), BasicVector3D< T >::x(), IParameterized::XComponentName(), BasicVector3D< T >::y(), IParameterized::YComponentName(), BasicVector3D< T >::z(), and IParameterized::ZComponentName().

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parameter()

RealParameter * IParameterized::parameter ( const std::string &  name ) const

inherited

Returns parameter with given 'name'.

Definition at line 83 of file IParameterized.cpp.

{
    return m_pool->parameter(name);
}

References IParameterized::m_pool.

Referenced by DepthProbeSimulation::initialize(), SpecularSimulation::initialize(), IParticle::registerAbundance(), Lattice::registerBasisVectors(), ParticleLayout::registerParticleDensity(), IParticle::registerPosition(), Layer::registerThickness(), Lattice2D::setRotationEnabled(), and DistributionLogNormal::setUnits().

removeParameter()

void IParameterized::removeParameter ( const std::string &  name )

inherited

Definition at line 88 of file IParameterized.cpp.

{
    m_pool->removeParameter(name);
}

References IParameterized::m_pool.

Referenced by IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParameterized::removeVector(), and Lattice2D::setRotationEnabled().

removeVector()

void IParameterized::removeVector ( const std::string &  base_name )

inherited

Definition at line 93 of file IParameterized.cpp.

{
    removeParameter(XComponentName(base_name));
    removeParameter(YComponentName(base_name));
    removeParameter(ZComponentName(base_name));
}

References IParameterized::removeParameter(), IParameterized::XComponentName(), IParameterized::YComponentName(), and IParameterized::ZComponentName().

Referenced by IParticle::registerPosition().

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XComponentName()

std::string IParameterized::XComponentName ( const std::string &  base_name )

staticinherited

Definition at line 100 of file IParameterized.cpp.

{
    return base_name + "X";
}

Referenced by Lattice::registerBasisVectors(), IParticle::registerPosition(), IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().

YComponentName()

std::string IParameterized::YComponentName ( const std::string &  base_name )

staticinherited

Definition at line 105 of file IParameterized.cpp.

{
    return base_name + "Y";
}

Referenced by IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().

ZComponentName()

std::string IParameterized::ZComponentName ( const std::string &  base_name )

staticinherited

Definition at line 110 of file IParameterized.cpp.

{
    return base_name + "Z";
}

Referenced by IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().

setName()

void IParameterized::setName ( const std::string &  name )

inlineinherited

Definition at line 68 of file IParameterized.h.

{ m_name = name; }

References IParameterized::m_name.

Referenced by BasicLattice::BasicLattice(), Beam::Beam(), Layer::clone(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), LayersWithAbsorptionBuilder::createSampleByIndex(), Basic2DParaCrystalBuilder::createSampleByIndex(), ParticleInVacuumBuilder::createSampleByIndex(), SimpleMagneticRotationBuilder::createSampleByIndex(), Crystal::Crystal(), DetectionProperties::DetectionProperties(), DistributionHandler::DistributionHandler(), FormFactorBAPol::FormFactorBAPol(), FormFactorCoreShell::FormFactorCoreShell(), FormFactorCrystal::FormFactorCrystal(), FormFactorDecoratorMaterial::FormFactorDecoratorMaterial(), FormFactorDecoratorPositionFactor::FormFactorDecoratorPositionFactor(), FormFactorDecoratorRotation::FormFactorDecoratorRotation(), FormFactorDWBA::FormFactorDWBA(), FormFactorDWBAPol::FormFactorDWBAPol(), FormFactorWeighted::FormFactorWeighted(), HexagonalLattice::HexagonalLattice(), IDetector::IDetector(), DepthProbeSimulation::initialize(), GISASSimulation::initialize(), OffSpecSimulation::initialize(), SpecularSimulation::initialize(), SpecularDetector1D::initialize(), MesoCrystal::initialize(), Particle::initialize(), ParticleComposition::initialize(), INode::INode(), Instrument::Instrument(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunction3DLattice::InterferenceFunction3DLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), InterferenceFunctionFinite3DLattice::InterferenceFunctionFinite3DLattice(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionNone::InterferenceFunctionNone(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), ISampleBuilder::ISampleBuilder(), IsGISAXSDetector::IsGISAXSDetector(), Lattice::Lattice(), Layer::Layer(), LayerInterface::LayerInterface(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), Beam::operator=(), SampleBuilderNode::operator=(), ParticleCoreShell::ParticleCoreShell(), ParticleDistribution::ParticleDistribution(), ParticleLayout::ParticleLayout(), RectangularDetector::RectangularDetector(), SampleBuilderNode::reset(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), SampleBuilderNode::SampleBuilderNode(), SampleBuilderNode::setSBN(), SphericalDetector::SphericalDetector(), and SquareLattice::SquareLattice().

getName()

const std::string& IParameterized::getName ( ) const

inlineinherited

Definition at line 69 of file IParameterized.h.

{ return m_name; }

References IParameterized::m_name.

Referenced by Beam::Beam(), Layer::clone(), IFormFactorBorn::computeSlicingEffects(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), INode::copyNumber(), IParameterized::createParameterTree(), IFormFactor::createSlicedFormFactor(), SampleToPython::defineFormFactors(), SampleToPython::defineInterferenceFunctions(), INode::displayName(), IDetector::IDetector(), Instrument::Instrument(), IParameterized::IParameterized(), Beam::operator=(), SampleBuilderNode::operator=(), anonymous_namespace{ParticleLayout.cpp}::particleDensityIsProvidedByInterference(), IParameterized::registerParameter(), SampleBuilderNode::SampleBuilderNode(), and IFormFactor::sliceFormFactor().

Member Data Documentation

m_mean

const double& FormFactorSphereGaussianRadius::m_mean

private

This is the mean radius.

Definition at line 47 of file FormFactorSphereGaussianRadius.h.

Referenced by calculateMeanR3(), clone(), onChange(), and radialExtension().

m_sigma

const double& FormFactorSphereGaussianRadius::m_sigma

private

Definition at line 48 of file FormFactorSphereGaussianRadius.h.

Referenced by calculateMeanR3(), clone(), and evaluate_for_q().

m_mean_r3

double FormFactorSphereGaussianRadius::m_mean_r3

private

This is the radius that gives the mean volume.

Definition at line 49 of file FormFactorSphereGaussianRadius.h.

Referenced by evaluate_for_q().

mP_shape

std::unique_ptr<IShape> IFormFactorBorn::mP_shape

protectedinherited

IShape object, used to retrieve vertices (which may be approximate in the case of round shapes).

For soft particles, this will be a hard mean shape.

Definition at line 68 of file IFormFactorBorn.h.

Referenced by IFormFactorBorn::bottomZ(), FormFactorCone::onChange(), FormFactorCylinder::onChange(), FormFactorEllipsoidalCylinder::onChange(), FormFactorFullSpheroid::onChange(), FormFactorHemiEllipsoid::onChange(), FormFactorHollowSphere::onChange(), FormFactorLongBoxGauss::onChange(), FormFactorLongBoxLorentz::onChange(), FormFactorTruncatedSphere::onChange(), FormFactorTruncatedSpheroid::onChange(), IProfileRectangularRipple::onChange(), ICosineRipple::onChange(), ISawtoothRipple::onChange(), onChange(), FormFactorSphereLogNormalRadius::onChange(), and IFormFactorBorn::topZ().

m_parent

const INode* INode::m_parent {nullptr}

privateinherited

Definition at line 81 of file INode.h.

Referenced by INode::displayName(), INode::parent(), and INode::setParent().

m_NP

const size_t INode::m_NP

protectedinherited

Definition at line 86 of file INode.h.

Referenced by INode::INode().

m_P

std::vector<double> INode::m_P

protectedinherited

Definition at line 87 of file INode.h.

Referenced by INode::INode(), and IFootprintFactor::setWidthRatio().

m_name

std::string IParameterized::m_name

privateinherited

Definition at line 72 of file IParameterized.h.

Referenced by IParameterized::getName(), and IParameterized::setName().

m_pool

std::unique_ptr<ParameterPool> IParameterized::m_pool

privateinherited

parameter pool (kind of pointer-to-implementation)

Definition at line 73 of file IParameterized.h.

Referenced by IParameterized::createParameterTree(), IParameterized::parameter(), IParameterized::parameterPool(), IParameterized::registerParameter(), IParameterized::removeParameter(), and IParameterized::setParameterValue().

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The documentation for this class was generated from the following files:

• /home/www/ba/Sample/SoftParticle/FormFactorSphereGaussianRadius.h
• /home/www/ba/Sample/SoftParticle/FormFactorSphereGaussianRadius.cpp