SpecularSimulation Class Reference

Inheritance diagram for SpecularSimulation:

Collaboration diagram for SpecularSimulation:

Public Member Functions
	SpecularSimulation ()
	~SpecularSimulation () override
SpecularSimulation *	clone () const override
void	prepareSimulation () override
void	accept (INodeVisitor *visitor) const override final
SimulationResult	result () const override
void	setScan (const ISpecularScan &scan)
const IAxis *	coordinateAxis () const
const IFootprintFactor *	footprintFactor () const
size_t	intensityMapSize () const override
const ISpecularScan *	dataHandler () const
void	runSimulation ()
void	runMPISimulation ()
void	setInstrument (const Instrument &instrument_)
const Instrument &	instrument () const
Instrument &	instrument ()
void	setBeamIntensity (double intensity)
double	getBeamIntensity () const
void	setBeamPolarization (const kvector_t bloch_vector)
void	setDetectorResolutionFunction (const IResolutionFunction2D &resolution_function)
void	removeDetectorResolutionFunction ()
void	setAnalyzerProperties (const kvector_t direction, double efficiency, double total_transmission)
void	setSample (const MultiLayer &sample)
const MultiLayer *	sample () const
void	setSampleBuilder (const std::shared_ptr< ISampleBuilder > &sample_builder)
void	setBackground (const IBackground &bg)
const IBackground *	background () const
void	addParameterDistribution (const std::string &param_name, const IDistribution1D &distribution, size_t nbr_samples, double sigma_factor=0.0, const RealLimits &limits=RealLimits())
void	addParameterDistribution (const ParameterDistribution &par_distr)
const DistributionHandler &	getDistributionHandler () const
void	setOptions (const SimulationOptions &options)
const SimulationOptions &	getOptions () const
SimulationOptions &	getOptions ()
void	subscribe (ProgressHandler::Callback_t inform)
void	setTerminalProgressMonitor ()
std::vector< const INode * >	getChildren () const
SimulationResult	convertData (const OutputData< double > &data, bool put_masked_areas_to_zero=true)
virtual void	transferToCPP ()
virtual std::string	treeToString () const
void	registerChild (INode *node)
virtual void	setParent (const INode *newParent)
const INode *	parent () const
INode *	parent ()
int	copyNumber (const INode *node) const
std::string	displayName () const
ParameterPool *	createParameterTree () const
ParameterPool *	parameterPool () const
std::string	parametersToString () const
RealParameter &	registerParameter (const std::string &name, double *parpointer)
void	registerVector (const std::string &base_name, kvector_t *p_vec, const std::string &units="nm")
void	setParameterValue (const std::string &name, double value)
void	setVectorValue (const std::string &base_name, kvector_t value)
RealParameter *	parameter (const std::string &name) const
virtual void	onChange ()
void	removeParameter (const std::string &name)
void	removeVector (const std::string &base_name)
void	setName (const std::string &name)
const std::string &	getName () const

Static Public Member Functions
static std::string	XComponentName (const std::string &base_name)
static std::string	YComponentName (const std::string &base_name)
static std::string	ZComponentName (const std::string &base_name)

Protected Member Functions
virtual void	transferResultsToIntensityMap ()
virtual void	updateIntensityMap ()
const SimulationOptions &	options () const
ProgressHandler &	progress ()

Protected Attributes
const size_t	m_NP
std::vector< double >	m_P

Private Member Functions
	SpecularSimulation (const SpecularSimulation &other)
void	initSimulationElementVector () override
std::unique_ptr< IComputation >	generateSingleThreadedComputation (size_t start, size_t n_elements) override
void	checkCache () const
void	validateParametrization (const ParameterDistribution &par_distr) const override
void	initialize ()
void	normalize (size_t start_ind, size_t n_elements) override
void	addBackgroundIntensity (size_t start_ind, size_t n_elements) override
void	addDataToCache (double weight) override
void	moveDataFromCache () override
size_t	numberOfSimulationElements () const override
std::vector< double >	rawResults () const override
void	setRawResults (const std::vector< double > &raw_data) override
void	runSingleSimulation (size_t batch_start, size_t batch_size, double weight=1.0)

Private Attributes
std::unique_ptr< ISpecularScan >	m_scan
std::vector< SpecularSimulationElement >	m_sim_elements
std::vector< double >	m_cache
SimulationOptions	m_options
ProgressHandler	m_progress
SampleProvider	m_sample_provider
DistributionHandler	m_distribution_handler
Instrument	m_instrument
std::unique_ptr< IBackground >	m_background
const INode *	m_parent {nullptr}
std::string	m_name
std::unique_ptr< ParameterPool >	m_pool

Detailed Description

Main class to run a specular simulation.

Definition at line 32 of file SpecularSimulation.h.

Constructor & Destructor Documentation

SpecularSimulation() [1/2]

SpecularSimulation::SpecularSimulation

(

)

Definition at line 74 of file SpecularSimulation.cpp.

                                       : Simulation()
{
    initialize();
}

References initialize().

Referenced by clone().

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~SpecularSimulation()

SpecularSimulation::~SpecularSimulation ( )

overridedefault

SpecularSimulation() [2/2]

SpecularSimulation::SpecularSimulation ( const SpecularSimulation &  other )

private

Definition at line 79 of file SpecularSimulation.cpp.

    : Simulation(other), m_scan(other.m_scan ? other.m_scan->clone() : nullptr),
      m_sim_elements(other.m_sim_elements), m_cache(other.m_cache)
{
    initialize();
}

References initialize().

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Member Function Documentation

clone()

SpecularSimulation * SpecularSimulation::clone ( ) const

overridevirtual

Implements Simulation.

Definition at line 88 of file SpecularSimulation.cpp.

{
    return new SpecularSimulation(*this);
}

References SpecularSimulation().

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prepareSimulation()

void SpecularSimulation::prepareSimulation ( )

overridevirtual

Put into a clean state for running a simulation.

Reimplemented from Simulation.

Definition at line 93 of file SpecularSimulation.cpp.

{
    if (instrument().getDetectorDimension() != 1) // detector must have only one axis
        throw std::runtime_error("Error in SpecularSimulation::prepareSimulation: the detector was "
                                 "not properly configured.");
    instrument().initDetector();
    Simulation::prepareSimulation();
}

References Instrument::initDetector(), Simulation::instrument(), and Simulation::prepareSimulation().

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accept()

void SpecularSimulation::accept ( INodeVisitor *  visitor ) const

inlinefinaloverridevirtual

Calls the INodeVisitor's visit method.

Implements INode.

Definition at line 43 of file SpecularSimulation.h.

{ visitor->visit(this); }

result()

SimulationResult SpecularSimulation::result ( ) const

overridevirtual

Returns the results of the simulation in a format that supports unit conversion and export to numpy arrays.

If simulation was not run, returns an array of proper size filled with zeros.

Implements Simulation.

Definition at line 107 of file SpecularSimulation.cpp.

{
    OutputData<double> data;
    data.addAxis(*coordinateAxis());
 
    if (!m_sim_elements.empty())
        data.setRawDataVector(m_scan->createIntensities(m_sim_elements));
    else
        data.setAllTo(0.0);
 
    auto converter = UnitConverter1D::createUnitConverter(*m_scan);
    return SimulationResult(data, *converter);
}

References OutputData< T >::addAxis(), coordinateAxis(), UnitConverter1D::createUnitConverter(), m_scan, m_sim_elements, OutputData< T >::setAllTo(), and OutputData< T >::setRawDataVector().

Referenced by rawResults().

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setScan()

void SpecularSimulation::setScan

(

const ISpecularScan &

scan

)

Sets chosen specular scan to the simulation.

Definition at line 121 of file SpecularSimulation.cpp.

{
    // TODO: move inside AngularSpecScan when pointwise resolution is implemented
    if (scan.coordinateAxis()->getMin() < 0.0)
        throw std::runtime_error(
            "Error in SpecularSimulation::setScan: minimum value on coordinate axis is negative.");
 
    m_scan.reset(scan.clone());
 
    SpecularDetector1D detector(*scan.coordinateAxis());
    instrument().setDetector(detector);
 
    // TODO: remove when pointwise resolution is implemented
    if (const auto* aScan = dynamic_cast<const AngularSpecScan*>(&scan))
        instrument().setBeamParameters(aScan->wavelength(), 0.0, 0.0);
}

References ISpecularScan::clone(), ISpecularScan::coordinateAxis(), IAxis::getMin(), Simulation::instrument(), m_scan, Instrument::setBeamParameters(), and Instrument::setDetector().

Referenced by StandardSimulations::BasicSpecularQ(), StandardSimulations::SpecularDivergentBeam(), StandardSimulations::SpecularWithGaussianBeam(), StandardSimulations::SpecularWithSquareBeam(), StandardSimulations::TOFRWithPointwiseResolution(), and StandardSimulations::TOFRWithRelativeResolution().

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coordinateAxis()

const IAxis * SpecularSimulation::coordinateAxis

(

)

const

Returns a pointer to coordinate axis.

Definition at line 138 of file SpecularSimulation.cpp.

{
    if (!m_scan || !m_scan->coordinateAxis())
        throw std::runtime_error(
            "Error in SpecularSimulation::getAlphaAxis: coordinate axis was not initialized.");
    return m_scan->coordinateAxis();
}

References m_scan.

Referenced by result().

footprintFactor()

const IFootprintFactor * SpecularSimulation::footprintFactor

(

)

const

Returns a pointer to footprint factor holder.

Definition at line 146 of file SpecularSimulation.cpp.

{
    return m_scan->footprintFactor();
}

References m_scan.

intensityMapSize()

size_t SpecularSimulation::intensityMapSize ( ) const

overridevirtual

Returns the total number of the intensity values in the simulation result.

Implements Simulation.

Definition at line 151 of file SpecularSimulation.cpp.

{
    return m_scan->coordinateAxis()->size();
}

References m_scan.

dataHandler()

const ISpecularScan* SpecularSimulation::dataHandler ( ) const

inline

Returns internal data handler.

Definition at line 64 of file SpecularSimulation.h.

{ return m_scan.get(); }

References m_scan.

Referenced by SimulationToPython::defineSpecularScan().

initSimulationElementVector()

void SpecularSimulation::initSimulationElementVector ( )

overrideprivatevirtual

Initializes the vector of Simulation elements.

Implements Simulation.

Definition at line 156 of file SpecularSimulation.cpp.

{
    if (!m_scan)
        throw std::runtime_error("Error in SpecularSimulation: beam parameters were not set.");
    m_sim_elements = generateSimulationElements(instrument(), *m_scan);
 
    if (!m_cache.empty())
        return;
    m_cache.resize(m_sim_elements.size(), 0);
}

References anonymous_namespace{SpecularSimulation.cpp}::generateSimulationElements(), Simulation::instrument(), m_cache, m_scan, and m_sim_elements.

Referenced by setRawResults().

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generateSingleThreadedComputation()

std::unique_ptr< IComputation > SpecularSimulation::generateSingleThreadedComputation ( size_t  start, size_t  n_elements  )

overrideprivatevirtual

Generate a single threaded computation for a given range of simulation elements.

Parameters

start	Index of the first element to include into computation
n_elements	Number of elements to process

Implements Simulation.

Definition at line 168 of file SpecularSimulation.cpp.

{
    ASSERT(start < m_sim_elements.size() && start + n_elements <= m_sim_elements.size());
    const auto& begin = m_sim_elements.begin() + static_cast<long>(start);
    return std::make_unique<SpecularComputation>(*sample(), options(), progress(), begin,
                                                 begin + static_cast<long>(n_elements));
}

References ASSERT, m_sim_elements, Simulation::options(), Simulation::progress(), and Simulation::sample().

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checkCache()

void SpecularSimulation::checkCache ( ) const

private

Definition at line 176 of file SpecularSimulation.cpp.

{
    if (m_sim_elements.size() != m_cache.size())
        throw std::runtime_error("Error in SpecularSimulation: the sizes of simulation element "
                                 "vector and of its cache are different");
}

References m_cache, and m_sim_elements.

Referenced by addDataToCache(), and moveDataFromCache().

validateParametrization()

void SpecularSimulation::validateParametrization ( const ParameterDistribution &  par_distr ) const

overrideprivatevirtual

Checks the distribution validity for simulation.

Reimplemented from Simulation.

Definition at line 183 of file SpecularSimulation.cpp.

{
    const bool zero_mean = par_distr.getDistribution()->getMean() == 0.0;
    if (zero_mean)
        return;
 
    std::unique_ptr<ParameterPool> parameter_pool(createParameterTree());
    const std::vector<RealParameter*> names =
        parameter_pool->getMatchedParameters(par_distr.getMainParameterName());
    for (const auto par : names)
        if (par->getName().find("InclinationAngle") != std::string::npos && !zero_mean)
            throw std::runtime_error("Error in SpecularSimulation: parameter distribution of "
                                     "beam inclination angle should have zero mean.");
}

References INode::createParameterTree(), ParameterDistribution::getDistribution(), ParameterDistribution::getMainParameterName(), and IDistribution1D::getMean().

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initialize()

void SpecularSimulation::initialize ( )

private

Initializes simulation.

Definition at line 198 of file SpecularSimulation.cpp.

{
    setName("SpecularSimulation");
 
    // allow for negative inclinations in the beam of specular simulation
    // it is required for proper averaging in the case of divergent beam
    instrument()
        .getBeam()
        .parameter("InclinationAngle")
        ->setLimits(RealLimits::limited(-M_PI_2, M_PI_2));
}

References Instrument::getBeam(), Simulation::instrument(), RealLimits::limited(), M_PI_2, IParameterized::parameter(), RealParameter::setLimits(), and IParameterized::setName().

Referenced by SpecularSimulation().

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normalize()

void SpecularSimulation::normalize ( size_t  start_ind, size_t  n_elements  )

overrideprivatevirtual

Normalize the detector counts to beam intensity, to solid angle, and to exposure angle.

Parameters

start_ind	Index of the first element to operate on
n_elements	Number of elements to process

Implements Simulation.

Definition at line 210 of file SpecularSimulation.cpp.

{
    const double beam_intensity = getBeamIntensity();
    if (beam_intensity == 0.0)
        return; // no normalization when beam intensity is zero
 
    std::vector<double> footprints;
    // TODO: use just m_scan when pointwise resolution is implemented
    if (const auto* aScan = dynamic_cast<const AngularSpecScan*>(m_scan.get()))
        footprints = mangledScan(*aScan, instrument().getBeam())->footprint(start_ind, n_elements);
    else
        footprints = m_scan->footprint(start_ind, n_elements);
 
    for (size_t i = start_ind, k = 0; i < start_ind + n_elements; ++i, ++k) {
        auto& element = m_sim_elements[i];
        element.setIntensity(element.getIntensity() * beam_intensity * footprints[k]);
    }
}

References Simulation::getBeamIntensity(), Simulation::instrument(), m_scan, m_sim_elements, and anonymous_namespace{SpecularSimulation.cpp}::mangledScan().

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addBackgroundIntensity()

void SpecularSimulation::addBackgroundIntensity ( size_t  start_ind, size_t  n_elements  )

overrideprivatevirtual

Implements Simulation.

Definition at line 229 of file SpecularSimulation.cpp.

{
    if (!background())
        return;
    for (size_t i = start_ind, stop_point = start_ind + n_elements; i < stop_point; ++i) {
        auto& element = m_sim_elements[i];
        element.setIntensity(background()->addBackground(element.getIntensity()));
    }
}

References Simulation::background(), and m_sim_elements.

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addDataToCache()

void SpecularSimulation::addDataToCache ( double  weight )

overrideprivatevirtual

Implements Simulation.

Definition at line 239 of file SpecularSimulation.cpp.

{
    checkCache();
    for (size_t i = 0, size = m_sim_elements.size(); i < size; ++i)
        m_cache[i] += m_sim_elements[i].getIntensity() * weight;
}

References checkCache(), m_cache, and m_sim_elements.

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moveDataFromCache()

void SpecularSimulation::moveDataFromCache ( )

overrideprivatevirtual

Implements Simulation.

Definition at line 246 of file SpecularSimulation.cpp.

{
    checkCache();
    for (size_t i = 0, size = m_sim_elements.size(); i < size; ++i)
        m_sim_elements[i].setIntensity(m_cache[i]);
    m_cache.clear();
    m_cache.shrink_to_fit();
}

References checkCache(), m_cache, and m_sim_elements.

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numberOfSimulationElements()

size_t SpecularSimulation::numberOfSimulationElements ( ) const

overrideprivatevirtual

Gets the number of elements this simulation needs to calculate.

Implements Simulation.

Definition at line 102 of file SpecularSimulation.cpp.

{
    return m_scan->numberOfSimulationElements();
}

References m_scan.

rawResults()

std::vector< double > SpecularSimulation::rawResults ( ) const

overrideprivatevirtual

Implements Simulation.

Definition at line 255 of file SpecularSimulation.cpp.

{
    std::vector<double> result;
    result.resize(m_sim_elements.size());
    for (unsigned i = 0; i < m_sim_elements.size(); ++i)
        result[i] = m_sim_elements[i].getIntensity();
    return result;
}

References m_sim_elements, and result().

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setRawResults()

void SpecularSimulation::setRawResults ( const std::vector< double > &  raw_data )

overrideprivatevirtual

Implements Simulation.

Definition at line 264 of file SpecularSimulation.cpp.

{
    initSimulationElementVector();
    if (raw_data.size() != m_sim_elements.size())
        throw std::runtime_error("SpecularSimulation::setRawResults: size of vector passed as "
                                 "argument doesn't match number of elements in this simulation");
    for (unsigned i = 0; i < raw_data.size(); i++)
        m_sim_elements[i].setIntensity(raw_data[i]);
    transferResultsToIntensityMap();
}

References initSimulationElementVector(), m_sim_elements, and Simulation::transferResultsToIntensityMap().

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runSimulation()

void Simulation::runSimulation ( )

inherited

Run a simulation, possibly averaged over parameter distributions.

Run simulation with possible averaging over parameter distributions.

Definition at line 200 of file Simulation.cpp.

{
    prepareSimulation();
 
    const size_t total_size = numberOfSimulationElements();
    size_t param_combinations = m_distribution_handler.getTotalNumberOfSamples();
 
    m_progress.reset();
    m_progress.setExpectedNTicks(param_combinations * total_size);
 
    // restrict calculation to current batch
    const size_t n_batches = m_options.getNumberOfBatches();
    const size_t current_batch = m_options.getCurrentBatch();
 
    const size_t batch_start = getStartIndex(n_batches, current_batch, total_size);
    const size_t batch_size = getNumberOfElements(n_batches, current_batch, total_size);
    if (batch_size == 0)
        return;
 
    std::unique_ptr<ParameterPool> param_pool(createParameterTree());
    for (size_t index = 0; index < param_combinations; ++index) {
        double weight = m_distribution_handler.setParameterValues(param_pool.get(), index);
        runSingleSimulation(batch_start, batch_size, weight);
    }
    m_distribution_handler.setParameterToMeans(param_pool.get());
    moveDataFromCache();
    transferResultsToIntensityMap();
}

References INode::createParameterTree(), SimulationOptions::getCurrentBatch(), SimulationOptions::getNumberOfBatches(), anonymous_namespace{Simulation.cpp}::getNumberOfElements(), anonymous_namespace{Simulation.cpp}::getStartIndex(), DistributionHandler::getTotalNumberOfSamples(), Simulation::m_distribution_handler, Simulation::m_options, Simulation::m_progress, Simulation::moveDataFromCache(), Simulation::numberOfSimulationElements(), Simulation::prepareSimulation(), ProgressHandler::reset(), Simulation::runSingleSimulation(), ProgressHandler::setExpectedNTicks(), DistributionHandler::setParameterToMeans(), DistributionHandler::setParameterValues(), and Simulation::transferResultsToIntensityMap().

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runMPISimulation()

void Simulation::runMPISimulation ( )

inherited

Run a simulation in a MPI environment.

Definition at line 229 of file Simulation.cpp.

{
    MPISimulation ompi;
    ompi.runSimulation(this);
}

References MPISimulation::runSimulation().

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setInstrument()

void Simulation::setInstrument ( const Instrument &  instrument_ )

inherited

Definition at line 235 of file Simulation.cpp.

{
    m_instrument = instrument_;
    updateIntensityMap();
}

References Simulation::m_instrument, and Simulation::updateIntensityMap().

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instrument() [1/2]

const Instrument& Simulation::instrument ( ) const

inlineinherited

Definition at line 55 of file Simulation.h.

{ return m_instrument; }

References Simulation::m_instrument.

Referenced by Simulation2D::addMask(), OffSpecSimulation::checkInitialization(), Simulation::convertData(), DepthProbeSimulation::createUnitConverter(), OffSpecSimulation::createUnitConverter(), SimulationToPython::defineDetector(), SimulationToPython::defineDetectorPolarizationAnalysis(), SimulationToPython::defineDetectorResolutionFunction(), SimulationToPython::defineGISASBeam(), SimulationToPython::defineMasks(), SimulationToPython::defineOffSpecBeam(), SimulationToPython::defineSpecularScan(), Simulation2D::generateSimulationElements(), Simulation::getBeamIntensity(), Simulation::getChildren(), DepthProbeSimulation::initialize(), initialize(), DepthProbeSimulation::initSimulationElementVector(), GISASSimulation::initSimulationElementVector(), OffSpecSimulation::initSimulationElementVector(), initSimulationElementVector(), GISASSimulation::intensityMapSize(), OffSpecSimulation::intensityMapSize(), Simulation2D::maskAll(), DepthProbeSimulation::normalize(), normalize(), GISASSimulation::prepareSimulation(), Simulation2D::prepareSimulation(), prepareSimulation(), Simulation::removeDetectorResolutionFunction(), Simulation2D::removeMasks(), GISASSimulation::result(), OffSpecSimulation::result(), Simulation::setAnalyzerProperties(), Simulation::setBeamIntensity(), DepthProbeSimulation::setBeamParameters(), OffSpecSimulation::setBeamParameters(), GISASSimulation::setBeamParameters(), Simulation::setBeamPolarization(), Simulation2D::setDetector(), Simulation2D::setDetectorParameters(), Simulation::setDetectorResolutionFunction(), Simulation2D::setRegionOfInterest(), setScan(), OffSpecSimulation::transferDetectorImage(), OffSpecSimulation::transferResultsToIntensityMap(), and OffSpecSimulation::updateIntensityMap().

instrument() [2/2]

Instrument& Simulation::instrument ( )

inlineinherited

Definition at line 56 of file Simulation.h.

{ return m_instrument; }

References Simulation::m_instrument.

setBeamIntensity()

void Simulation::setBeamIntensity ( double  intensity )

inherited

Definition at line 173 of file Simulation.cpp.

{
    instrument().setBeamIntensity(intensity);
}

References Simulation::instrument(), and Instrument::setBeamIntensity().

Referenced by StandardSimulations::GISASWithMasks().

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getBeamIntensity()

double Simulation::getBeamIntensity ( ) const

inherited

Definition at line 178 of file Simulation.cpp.

{
    return instrument().getBeamIntensity();
}

References Instrument::getBeamIntensity(), and Simulation::instrument().

Referenced by DepthProbeSimulation::normalize(), Simulation2D::normalize(), and normalize().

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setBeamPolarization()

void Simulation::setBeamPolarization ( const kvector_t  bloch_vector )

inherited

Sets the beam polarization according to the given Bloch vector.

Definition at line 184 of file Simulation.cpp.

{
    instrument().setBeamPolarization(bloch_vector);
}

References Simulation::instrument(), and Instrument::setBeamPolarization().

Referenced by StandardSimulations::BasicGISAS00(), StandardSimulations::BasicPolarizedGISAS(), StandardSimulations::MaxiGISAS00(), StandardSimulations::MiniGISASPolarizationMM(), StandardSimulations::MiniGISASPolarizationMP(), StandardSimulations::MiniGISASPolarizationPM(), and StandardSimulations::MiniGISASPolarizationPP().

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setDetectorResolutionFunction()

void Simulation::setDetectorResolutionFunction ( const IResolutionFunction2D &  resolution_function )

inherited

Definition at line 156 of file Simulation.cpp.

{
    instrument().setDetectorResolutionFunction(resolution_function);
}

References Simulation::instrument(), and Instrument::setDetectorResolutionFunction().

Referenced by StandardSimulations::MiniGISASDetectorResolution().

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removeDetectorResolutionFunction()

void Simulation::removeDetectorResolutionFunction ( )

inherited

Definition at line 161 of file Simulation.cpp.

{
    instrument().removeDetectorResolution();
}

References Simulation::instrument(), and Instrument::removeDetectorResolution().

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setAnalyzerProperties()

void Simulation::setAnalyzerProperties ( const kvector_t  direction, double  efficiency, double  total_transmission  )

inherited

Sets the polarization analyzer characteristics of the detector.

Definition at line 167 of file Simulation.cpp.

{
    instrument().setAnalyzerProperties(direction, efficiency, total_transmission);
}

References Simulation::instrument(), and Instrument::setAnalyzerProperties().

Referenced by StandardSimulations::BasicGISAS00(), StandardSimulations::BasicPolarizedGISAS(), StandardSimulations::MaxiGISAS00(), StandardSimulations::MiniGISASPolarizationMM(), StandardSimulations::MiniGISASPolarizationMP(), StandardSimulations::MiniGISASPolarizationPM(), and StandardSimulations::MiniGISASPolarizationPP().

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setSample()

void Simulation::setSample ( const MultiLayer &  sample )

inherited

The MultiLayer object will not be owned by the Simulation object.

Definition at line 242 of file Simulation.cpp.

{
    m_sample_provider.setSample(sample);
}

References Simulation::m_sample_provider, Simulation::sample(), and SampleProvider::setSample().

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sample()

const MultiLayer * Simulation::sample ( ) const

inherited

Definition at line 247 of file Simulation.cpp.

{
    return m_sample_provider.sample();
}

References Simulation::m_sample_provider, and SampleProvider::sample().

Referenced by SimulationToPython::generateSimulationCode(), DepthProbeSimulation::generateSingleThreadedComputation(), Simulation2D::generateSingleThreadedComputation(), generateSingleThreadedComputation(), Simulation::setSample(), and DepthProbeSimulation::validityCheck().

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setSampleBuilder()

void Simulation::setSampleBuilder ( const std::shared_ptr< ISampleBuilder > &  sample_builder )

inherited

Definition at line 252 of file Simulation.cpp.

{
    m_sample_provider.setBuilder(sample_builder);
}

References Simulation::m_sample_provider, and SampleProvider::setBuilder().

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setBackground()

void Simulation::setBackground ( const IBackground &  bg )

inherited

Definition at line 257 of file Simulation.cpp.

{
    m_background.reset(bg.clone());
    registerChild(m_background.get());
}

References IBackground::clone(), Simulation::m_background, and INode::registerChild().

Referenced by StandardSimulations::ConstantBackgroundGISAS(), and Simulation::Simulation().

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background()

const IBackground* Simulation::background ( ) const

inlineinherited

Definition at line 75 of file Simulation.h.

{ return m_background.get(); }

References Simulation::m_background.

Referenced by DepthProbeSimulation::addBackgroundIntensity(), Simulation2D::addBackgroundIntensity(), addBackgroundIntensity(), and SimulationToPython::defineBackground().

addParameterDistribution() [1/2]

void Simulation::addParameterDistribution ( const std::string &  param_name, const IDistribution1D &  distribution, size_t  nbr_samples, double  sigma_factor = 0.0, const RealLimits &  limits = RealLimits()  )

inherited

Definition at line 273 of file Simulation.cpp.

{
    ParameterDistribution par_distr(param_name, distribution, nbr_samples, sigma_factor, limits);
    addParameterDistribution(par_distr);
}

Referenced by StandardSimulations::MiniGISASBeamDivergence().

addParameterDistribution() [2/2]

void Simulation::addParameterDistribution ( const ParameterDistribution &  par_distr )

inherited

Definition at line 281 of file Simulation.cpp.

{
    validateParametrization(par_distr);
    m_distribution_handler.addParameterDistribution(par_distr);
}

References DistributionHandler::addParameterDistribution(), Simulation::m_distribution_handler, and Simulation::validateParametrization().

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getDistributionHandler()

const DistributionHandler& Simulation::getDistributionHandler ( ) const

inlineinherited

Definition at line 89 of file Simulation.h.

{ return m_distribution_handler; }

References Simulation::m_distribution_handler.

Referenced by SimulationToPython::defineParameterDistributions().

setOptions()

void Simulation::setOptions ( const SimulationOptions &  options )

inlineinherited

Definition at line 91 of file Simulation.h.

{ m_options = options; }

References Simulation::m_options, and Simulation::options().

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getOptions() [1/2]

const SimulationOptions& Simulation::getOptions ( ) const

inlineinherited

Definition at line 92 of file Simulation.h.

{ return m_options; }

References Simulation::m_options.

Referenced by SimulationToPython::defineSimulationOptions(), StandardSimulations::MiniGISASMonteCarlo(), and StandardSimulations::MiniGISASSpecularPeak().

getOptions() [2/2]

SimulationOptions& Simulation::getOptions ( )

inlineinherited

Definition at line 93 of file Simulation.h.

{ return m_options; }

References Simulation::m_options.

subscribe()

void Simulation::subscribe ( ProgressHandler::Callback_t  inform )

inlineinherited

Definition at line 95 of file Simulation.h.

{ m_progress.subscribe(inform); }

References Simulation::m_progress, and ProgressHandler::subscribe().

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setTerminalProgressMonitor()

void Simulation::setTerminalProgressMonitor ( )

inherited

Initializes a progress monitor that prints to stdout.

Definition at line 145 of file Simulation.cpp.

{
    m_progress.subscribe([](size_t percentage_done) -> bool {
        if (percentage_done < 100)
            std::cout << std::setprecision(2) << "\r... " << percentage_done << "%" << std::flush;
        else // wipe out
            std::cout << "\r... 100%\n";
        return true;
    });
}

References Simulation::m_progress, and ProgressHandler::subscribe().

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getChildren()

std::vector< const INode * > Simulation::getChildren ( ) const

virtualinherited

Returns a vector of children (const).

Reimplemented from INode.

Definition at line 263 of file Simulation.cpp.

{
    std::vector<const INode*> result;
    result.push_back(&instrument());
    result << m_sample_provider.getChildren();
    if (m_background)
        result.push_back(m_background.get());
    return result;
}

References SampleProvider::getChildren(), Simulation::instrument(), Simulation::m_background, Simulation::m_sample_provider, and Simulation::result().

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convertData()

SimulationResult Simulation::convertData ( const OutputData< double > &  data, bool  put_masked_areas_to_zero = true  )

inherited

Convert user data to SimulationResult object for later drawing in various axes units.

User data will be cropped to the ROI defined in the simulation, amplitudes in areas corresponding to the masked areas of the detector will be set to zero.

Definition at line 317 of file Simulation.cpp.

{
    auto converter = UnitConverterUtils::createConverter(*this);
    auto roi_data = UnitConverterUtils::createOutputData(*converter, converter->defaultUnits());
 
    const IDetector& detector = instrument().detector();
 
    if (roi_data->hasSameDimensions(data)) {
        // data is already cropped to ROI
        if (put_masked_areas_to_zero) {
            detector.iterate(
                [&](IDetector::const_iterator it) {
                    (*roi_data)[it.roiIndex()] = data[it.roiIndex()];
                },
                /*visit_masked*/ false);
        } else {
            roi_data->setRawDataVector(data.getRawDataVector());
        }
 
    } else if (detHasSameDimensions(detector, data)) {
        // exp data has same shape as the detector, we have to put orig data to smaller roi map
        detector.iterate(
            [&](IDetector::const_iterator it) {
                (*roi_data)[it.roiIndex()] = data[it.detectorIndex()];
            },
            /*visit_masked*/ !put_masked_areas_to_zero);
 
    } else {
        throw std::runtime_error("FitObject::init_dataset() -> Error. Detector and exp data have "
                                 "different shape.");
    }
 
    return SimulationResult(*roi_data, *converter);
}

References UnitConverterUtils::createConverter(), UnitConverterUtils::createOutputData(), Instrument::detector(), SimulationAreaIterator::detectorIndex(), anonymous_namespace{Simulation.cpp}::detHasSameDimensions(), OutputData< T >::getRawDataVector(), Simulation::instrument(), IDetector::iterate(), and SimulationAreaIterator::roiIndex().

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transferResultsToIntensityMap()

virtual void Simulation::transferResultsToIntensityMap ( )

inlineprotectedvirtualinherited

Creates the appropriate data structure (e.g.

2D intensity map) from the calculated SimulationElement objects

Reimplemented in OffSpecSimulation.

Definition at line 110 of file Simulation.h.

{}

Referenced by Simulation::runSimulation(), Simulation2D::setRawResults(), and setRawResults().

updateIntensityMap()

virtual void Simulation::updateIntensityMap ( )

inlineprotectedvirtualinherited

Reimplemented in OffSpecSimulation.

Definition at line 115 of file Simulation.h.

{}

Referenced by Simulation2D::setDetectorParameters(), and Simulation::setInstrument().

options()

const SimulationOptions& Simulation::options ( ) const

inlineprotectedinherited

Definition at line 120 of file Simulation.h.

{ return m_options; }

References Simulation::m_options.

Referenced by DepthProbeSimulation::generateSingleThreadedComputation(), Simulation2D::generateSingleThreadedComputation(), generateSingleThreadedComputation(), and Simulation::setOptions().

progress()

ProgressHandler& Simulation::progress ( )

inlineprotectedinherited

Definition at line 121 of file Simulation.h.

{ return m_progress; }

References Simulation::m_progress.

Referenced by DepthProbeSimulation::generateSingleThreadedComputation(), Simulation2D::generateSingleThreadedComputation(), and generateSingleThreadedComputation().

runSingleSimulation()

void Simulation::runSingleSimulation ( size_t  batch_start, size_t  batch_size, double  weight = 1.0  )

privateinherited

Runs a single simulation with fixed parameter values.

If desired, the simulation is run in several threads.

Definition at line 289 of file Simulation.cpp.

{
    initSimulationElementVector();
 
    const size_t n_threads = m_options.getNumberOfThreads();
    ASSERT(n_threads > 0);
 
    std::vector<std::unique_ptr<IComputation>> computations;
 
    for (size_t i_thread = 0; i_thread < n_threads;
         ++i_thread) { // Distribute computations by threads
        const size_t thread_start = batch_start + getStartIndex(n_threads, i_thread, batch_size);
        const size_t thread_size = getNumberOfElements(n_threads, i_thread, batch_size);
        if (thread_size == 0)
            break;
        computations.push_back(generateSingleThreadedComputation(thread_start, thread_size));
    }
    runComputations(std::move(computations));
 
    normalize(batch_start, batch_size);
    addBackgroundIntensity(batch_start, batch_size);
    addDataToCache(weight);
}

References Simulation::addBackgroundIntensity(), Simulation::addDataToCache(), ASSERT, Simulation::generateSingleThreadedComputation(), anonymous_namespace{Simulation.cpp}::getNumberOfElements(), SimulationOptions::getNumberOfThreads(), anonymous_namespace{Simulation.cpp}::getStartIndex(), Simulation::initSimulationElementVector(), Simulation::m_options, Simulation::normalize(), and anonymous_namespace{Simulation.cpp}::runComputations().

Referenced by Simulation::runSimulation().

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transferToCPP()

virtual void ICloneable::transferToCPP ( )

inlinevirtualinherited

Used for Python overriding of clone (see swig/tweaks.py)

Definition at line 34 of file ICloneable.h.

treeToString()

std::string INode::treeToString ( ) const

virtualinherited

Returns multiline string representing tree structure below the node.

Definition at line 53 of file INode.cpp.

{
    return NodeUtils::nodeToString(*this);
}

References NodeUtils::nodeToString().

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registerChild()

void INode::registerChild ( INode *  node )

inherited

Definition at line 58 of file INode.cpp.

{
    ASSERT(node);
    node->setParent(this);
}

References ASSERT, and INode::setParent().

Referenced by ParticleLayout::addAndRegisterAbstractParticle(), ParticleCoreShell::addAndRegisterCore(), MultiLayer::addAndRegisterInterface(), MultiLayer::addAndRegisterLayer(), ParticleCoreShell::addAndRegisterShell(), Layer::addLayout(), ParticleComposition::addParticlePointer(), Beam::Beam(), Crystal::Crystal(), IDetector::IDetector(), Simulation::initialize(), MesoCrystal::initialize(), Instrument::Instrument(), Beam::operator=(), Instrument::operator=(), Particle::Particle(), ParticleDistribution::ParticleDistribution(), IParticle::rotate(), ParticleLayout::setAndRegisterInterferenceFunction(), Simulation::setBackground(), InterferenceFunction1DLattice::setDecayFunction(), InterferenceFunction2DLattice::setDecayFunction(), Instrument::setDetector(), IDetector::setDetectorResolution(), Beam::setFootprintFactor(), Particle::setFormFactor(), InterferenceFunctionFinite3DLattice::setLattice(), InterferenceFunction2DLattice::setLattice(), InterferenceFunction2DParaCrystal::setLattice(), InterferenceFunction2DSuperLattice::setLattice(), InterferenceFunctionFinite2DLattice::setLattice(), InterferenceFunctionRadialParaCrystal::setProbabilityDistribution(), InterferenceFunction2DParaCrystal::setProbabilityDistributions(), ConvolutionDetectorResolution::setResolutionFunction(), IParticle::setRotation(), LayerInterface::setRoughness(), and InterferenceFunction2DSuperLattice::setSubstructureIFF().

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setParent()

void INode::setParent ( const INode *  newParent )

virtualinherited

Reimplemented in SampleProvider.

Definition at line 69 of file INode.cpp.

{
    m_parent = newParent;
}

References INode::m_parent.

Referenced by INode::registerChild(), SampleProvider::setBuilder(), and SampleProvider::setParent().

parent() [1/2]

const INode * INode::parent ( ) const

inherited

Definition at line 74 of file INode.cpp.

{
    return m_parent;
}

References INode::m_parent.

Referenced by INode::copyNumber(), INode::createParameterTree(), NodeUtils::nodePath(), Lattice2D::onChange(), SampleProvider::setBuilder(), SampleProvider::setParent(), and SampleProvider::setSample().

parent() [2/2]

INode * INode::parent ( )

inherited

Definition at line 79 of file INode.cpp.

{
    return const_cast<INode*>(m_parent);
}

References INode::m_parent.

copyNumber()

int INode::copyNumber ( const INode *  node ) const

inherited

Returns copyNumber of child, which takes into account existence of children with same name.

Definition at line 84 of file INode.cpp.

{
    if (node->parent() != this)
        return -1;
 
    int result(-1), count(0);
    for (auto child : getChildren()) {
 
        if (child == nullptr)
            throw std::runtime_error("INode::copyNumber() -> Error. Nullptr as child.");
 
        if (child == node)
            result = count;
 
        if (child->getName() == node->getName())
            ++count;
    }
 
    return count > 1 ? result : -1;
}

References INode::getChildren(), IParameterized::getName(), and INode::parent().

Referenced by INode::displayName().

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displayName()

std::string INode::displayName ( ) const

inherited

Returns display name, composed from the name of node and it's copy number.

Definition at line 105 of file INode.cpp.

{
    std::string result = getName();
    if (m_parent) {
        int index = m_parent->copyNumber(this);
        if (index >= 0)
            result = result + std::to_string(index);
    }
    return result;
}

References INode::copyNumber(), IParameterized::getName(), and INode::m_parent.

Referenced by NodeUtils::nodePath(), and anonymous_namespace{NodeUtils.cpp}::nodeString().

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createParameterTree()

ParameterPool * INode::createParameterTree ( ) const

virtualinherited

Creates new parameter pool, with all local parameters and those of its children.

Reimplemented from IParameterized.

Definition at line 116 of file INode.cpp.

{
    std::unique_ptr<ParameterPool> result(new ParameterPool);
 
    NodeIterator<PreorderStrategy> it(this);
    it.first();
    while (!it.isDone()) {
        const INode* child = it.getCurrent();
        const std::string path = NodeUtils::nodePath(*child, this->parent()) + "/";
        child->parameterPool()->copyToExternalPool(path, result.get());
        it.next();
    }
 
    return result.release();
}

References ParameterPool::copyToExternalPool(), NodeIterator< Strategy >::first(), NodeIterator< Strategy >::getCurrent(), NodeIterator< Strategy >::isDone(), NodeIterator< Strategy >::next(), NodeUtils::nodePath(), IParameterized::parameterPool(), and INode::parent().

Referenced by ParticleDistribution::generateParticles(), Simulation::runSimulation(), DepthProbeSimulation::validateParametrization(), OffSpecSimulation::validateParametrization(), and validateParametrization().

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parameterPool()

ParameterPool* IParameterized::parameterPool ( ) const

inlineinherited

Returns pointer to the parameter pool.

Definition at line 38 of file IParameterized.h.

{ return m_pool.get(); } // has non-const usages!

References IParameterized::m_pool.

Referenced by pyfmt2::argumentList(), SampleBuilderNode::borrow_builder_parameters(), INode::createParameterTree(), INode::INode(), IParameterized::IParameterized(), anonymous_namespace{NodeUtils.cpp}::poolToString(), SampleBuilderNode::reset(), and IDistribution1D::setUnits().

parametersToString()

std::string IParameterized::parametersToString ( ) const

inherited

Returns multiline string representing available parameters.

Definition at line 40 of file IParameterized.cpp.

{
    std::ostringstream result;
    std::unique_ptr<ParameterPool> P_pool(createParameterTree());
    result << *P_pool << "\n";
    return result.str();
}

References IParameterized::createParameterTree().

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registerParameter()

RealParameter & IParameterized::registerParameter ( const std::string &  name, double *  parpointer  )

inherited

Definition at line 48 of file IParameterized.cpp.

{
    return m_pool->addParameter(
        new RealParameter(name, data, getName(), [&]() -> void { onChange(); }));
}

References IParameterized::getName(), IParameterized::m_pool, and IParameterized::onChange().

Referenced by BasicLattice::BasicLattice(), Beam::Beam(), CylindersInBABuilder::CylindersInBABuilder(), DetectionProperties::DetectionProperties(), HexagonalLattice::HexagonalLattice(), IInterferenceFunction::IInterferenceFunction(), INode::INode(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), Lattice2D::Lattice2D(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleDistribution::ParticleDistribution(), PlainMultiLayerBySLDBuilder::PlainMultiLayerBySLDBuilder(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParameterized::registerVector(), ParticleLayout::registerWeight(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), ResonatorBuilder::ResonatorBuilder(), Lattice2D::setRotationEnabled(), SquareLattice::SquareLattice(), and TriangularRippleBuilder::TriangularRippleBuilder().

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registerVector()

void IParameterized::registerVector ( const std::string &  base_name, kvector_t *  p_vec, const std::string &  units = "nm"  )

inherited

Definition at line 54 of file IParameterized.cpp.

{
    registerParameter(XComponentName(base_name), &((*p_vec)[0])).setUnit(units);
    registerParameter(YComponentName(base_name), &((*p_vec)[1])).setUnit(units);
    registerParameter(ZComponentName(base_name), &((*p_vec)[2])).setUnit(units);
}

References IParameterized::registerParameter(), RealParameter::setUnit(), IParameterized::XComponentName(), IParameterized::YComponentName(), and IParameterized::ZComponentName().

Referenced by Beam::Beam(), DetectionProperties::DetectionProperties(), InterferenceFunctionTwin::InterferenceFunctionTwin(), MultiLayer::MultiLayer(), Lattice::registerBasisVectors(), and IParticle::registerPosition().

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setParameterValue()

void IParameterized::setParameterValue ( const std::string &  name, double  value  )

inherited

Definition at line 62 of file IParameterized.cpp.

{
    if (name.find('*') == std::string::npos && name.find('/') == std::string::npos) {
        m_pool->setParameterValue(name, value);
    } else {
        std::unique_ptr<ParameterPool> P_pool{createParameterTree()};
        if (name.find('*') != std::string::npos)
            P_pool->setMatchedParametersValue(name, value);
        else
            P_pool->setParameterValue(name, value);
    }
}

References IParameterized::createParameterTree(), IParameterized::m_pool, and ParameterPool::setMatchedParametersValue().

Referenced by AsymRippleBuilder::buildSample(), and IParameterized::setVectorValue().

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setVectorValue()

void IParameterized::setVectorValue ( const std::string &  base_name, kvector_t  value  )

inherited

Definition at line 75 of file IParameterized.cpp.

{
    setParameterValue(XComponentName(base_name), value.x());
    setParameterValue(YComponentName(base_name), value.y());
    setParameterValue(ZComponentName(base_name), value.z());
}

References IParameterized::setParameterValue(), BasicVector3D< T >::x(), IParameterized::XComponentName(), BasicVector3D< T >::y(), IParameterized::YComponentName(), BasicVector3D< T >::z(), and IParameterized::ZComponentName().

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parameter()

RealParameter * IParameterized::parameter ( const std::string &  name ) const

inherited

Returns parameter with given 'name'.

Definition at line 83 of file IParameterized.cpp.

{
    return m_pool->parameter(name);
}

References IParameterized::m_pool.

Referenced by DepthProbeSimulation::initialize(), initialize(), IParticle::registerAbundance(), Lattice::registerBasisVectors(), ParticleLayout::registerParticleDensity(), IParticle::registerPosition(), Layer::registerThickness(), Lattice2D::setRotationEnabled(), and DistributionLogNormal::setUnits().

onChange()

virtual void IParameterized::onChange ( )

inlinevirtualinherited

Action to be taken in inherited class when a parameter has changed.

Reimplemented in IProfileRipple, FormFactorSphereLogNormalRadius, FormFactorSphereGaussianRadius, FormFactorGaussSphere, ISawtoothRipple, ICosineRipple, IProfileRectangularRipple, FormFactorTruncatedSpheroid, FormFactorTruncatedSphere, FormFactorTruncatedCube, FormFactorTetrahedron, FormFactorPyramid, FormFactorPrism6, FormFactorPrism3, FormFactorLongBoxLorentz, FormFactorLongBoxGauss, FormFactorIcosahedron, FormFactorHollowSphere, FormFactorHemiEllipsoid, FormFactorFullSpheroid, FormFactorFullSphere, FormFactorEllipsoidalCylinder, FormFactorDodecahedron, FormFactorCylinder, FormFactorCuboctahedron, FormFactorCone6, FormFactorCone, FormFactorCantellatedCube, FormFactorBox, FormFactorAnisoPyramid, InterferenceFunction3DLattice, InterferenceFunction2DLattice, Lattice, and Lattice2D.

Definition at line 58 of file IParameterized.h.

{}

Referenced by Lattice2D::onChange(), and IParameterized::registerParameter().

removeParameter()

void IParameterized::removeParameter ( const std::string &  name )

inherited

Definition at line 88 of file IParameterized.cpp.

{
    m_pool->removeParameter(name);
}

References IParameterized::m_pool.

Referenced by IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParameterized::removeVector(), and Lattice2D::setRotationEnabled().

removeVector()

void IParameterized::removeVector ( const std::string &  base_name )

inherited

Definition at line 93 of file IParameterized.cpp.

{
    removeParameter(XComponentName(base_name));
    removeParameter(YComponentName(base_name));
    removeParameter(ZComponentName(base_name));
}

References IParameterized::removeParameter(), IParameterized::XComponentName(), IParameterized::YComponentName(), and IParameterized::ZComponentName().

Referenced by IParticle::registerPosition().

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XComponentName()

std::string IParameterized::XComponentName ( const std::string &  base_name )

staticinherited

Definition at line 100 of file IParameterized.cpp.

{
    return base_name + "X";
}

Referenced by Lattice::registerBasisVectors(), IParticle::registerPosition(), IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().

YComponentName()

std::string IParameterized::YComponentName ( const std::string &  base_name )

staticinherited

Definition at line 105 of file IParameterized.cpp.

{
    return base_name + "Y";
}

Referenced by IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().

ZComponentName()

std::string IParameterized::ZComponentName ( const std::string &  base_name )

staticinherited

Definition at line 110 of file IParameterized.cpp.

{
    return base_name + "Z";
}

Referenced by IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().

setName()

void IParameterized::setName ( const std::string &  name )

inlineinherited

Definition at line 68 of file IParameterized.h.

{ m_name = name; }

References IParameterized::m_name.

Referenced by BasicLattice::BasicLattice(), Beam::Beam(), Layer::clone(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), LayersWithAbsorptionBuilder::createSampleByIndex(), Basic2DParaCrystalBuilder::createSampleByIndex(), ParticleInVacuumBuilder::createSampleByIndex(), SimpleMagneticRotationBuilder::createSampleByIndex(), Crystal::Crystal(), DetectionProperties::DetectionProperties(), DistributionHandler::DistributionHandler(), FormFactorBAPol::FormFactorBAPol(), FormFactorCoreShell::FormFactorCoreShell(), FormFactorCrystal::FormFactorCrystal(), FormFactorDecoratorMaterial::FormFactorDecoratorMaterial(), FormFactorDecoratorPositionFactor::FormFactorDecoratorPositionFactor(), FormFactorDecoratorRotation::FormFactorDecoratorRotation(), FormFactorDWBA::FormFactorDWBA(), FormFactorDWBAPol::FormFactorDWBAPol(), FormFactorWeighted::FormFactorWeighted(), HexagonalLattice::HexagonalLattice(), IDetector::IDetector(), DepthProbeSimulation::initialize(), GISASSimulation::initialize(), OffSpecSimulation::initialize(), initialize(), SpecularDetector1D::initialize(), MesoCrystal::initialize(), Particle::initialize(), ParticleComposition::initialize(), INode::INode(), Instrument::Instrument(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunction3DLattice::InterferenceFunction3DLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), InterferenceFunctionFinite3DLattice::InterferenceFunctionFinite3DLattice(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionNone::InterferenceFunctionNone(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), ISampleBuilder::ISampleBuilder(), IsGISAXSDetector::IsGISAXSDetector(), Lattice::Lattice(), Layer::Layer(), LayerInterface::LayerInterface(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), Beam::operator=(), SampleBuilderNode::operator=(), ParticleCoreShell::ParticleCoreShell(), ParticleDistribution::ParticleDistribution(), ParticleLayout::ParticleLayout(), RectangularDetector::RectangularDetector(), SampleBuilderNode::reset(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), SampleBuilderNode::SampleBuilderNode(), SampleBuilderNode::setSBN(), SphericalDetector::SphericalDetector(), and SquareLattice::SquareLattice().

getName()

const std::string& IParameterized::getName ( ) const

inlineinherited

Definition at line 69 of file IParameterized.h.

{ return m_name; }

References IParameterized::m_name.

Referenced by Beam::Beam(), Layer::clone(), IFormFactorBorn::computeSlicingEffects(), ConvolutionDetectorResolution::ConvolutionDetectorResolution(), INode::copyNumber(), IParameterized::createParameterTree(), IFormFactor::createSlicedFormFactor(), SampleToPython::defineFormFactors(), SampleToPython::defineInterferenceFunctions(), INode::displayName(), IDetector::IDetector(), Instrument::Instrument(), IParameterized::IParameterized(), Beam::operator=(), SampleBuilderNode::operator=(), anonymous_namespace{ParticleLayout.cpp}::particleDensityIsProvidedByInterference(), IParameterized::registerParameter(), SampleBuilderNode::SampleBuilderNode(), and IFormFactor::sliceFormFactor().

Member Data Documentation

m_scan

std::unique_ptr<ISpecularScan> SpecularSimulation::m_scan

private

Definition at line 104 of file SpecularSimulation.h.

Referenced by coordinateAxis(), dataHandler(), footprintFactor(), initSimulationElementVector(), intensityMapSize(), normalize(), numberOfSimulationElements(), result(), and setScan().

m_sim_elements

std::vector<SpecularSimulationElement> SpecularSimulation::m_sim_elements

private

Definition at line 105 of file SpecularSimulation.h.

Referenced by addBackgroundIntensity(), addDataToCache(), checkCache(), generateSingleThreadedComputation(), initSimulationElementVector(), moveDataFromCache(), normalize(), rawResults(), result(), and setRawResults().

m_cache

std::vector<double> SpecularSimulation::m_cache

private

Definition at line 106 of file SpecularSimulation.h.

Referenced by addDataToCache(), checkCache(), initSimulationElementVector(), and moveDataFromCache().

m_options

SimulationOptions Simulation::m_options

privateinherited

Definition at line 152 of file Simulation.h.

Referenced by Simulation::getOptions(), Simulation::options(), Simulation::runSimulation(), Simulation::runSingleSimulation(), and Simulation::setOptions().

m_progress

ProgressHandler Simulation::m_progress

privateinherited

Definition at line 153 of file Simulation.h.

Referenced by Simulation::progress(), Simulation::runSimulation(), Simulation::setTerminalProgressMonitor(), and Simulation::subscribe().

m_sample_provider

SampleProvider Simulation::m_sample_provider

privateinherited

Definition at line 154 of file Simulation.h.

Referenced by Simulation::getChildren(), Simulation::initialize(), Simulation::prepareSimulation(), Simulation::sample(), Simulation::setSample(), and Simulation::setSampleBuilder().

m_distribution_handler

DistributionHandler Simulation::m_distribution_handler

privateinherited

Definition at line 155 of file Simulation.h.

Referenced by Simulation::addParameterDistribution(), Simulation::getDistributionHandler(), and Simulation::runSimulation().

m_instrument

Instrument Simulation::m_instrument

privateinherited

Definition at line 156 of file Simulation.h.

Referenced by Simulation::initialize(), Simulation::instrument(), and Simulation::setInstrument().

m_background

std::unique_ptr<IBackground> Simulation::m_background

privateinherited

Definition at line 157 of file Simulation.h.

Referenced by Simulation::background(), Simulation::getChildren(), Simulation::setBackground(), and Simulation::Simulation().

m_parent

const INode* INode::m_parent {nullptr}

privateinherited

Definition at line 81 of file INode.h.

Referenced by INode::displayName(), INode::parent(), and INode::setParent().

m_NP

const size_t INode::m_NP

protectedinherited

Definition at line 86 of file INode.h.

Referenced by INode::INode().

m_P

std::vector<double> INode::m_P

protectedinherited

Definition at line 87 of file INode.h.

Referenced by INode::INode(), and IFootprintFactor::setWidthRatio().

m_name

std::string IParameterized::m_name

privateinherited

Definition at line 72 of file IParameterized.h.

Referenced by IParameterized::getName(), and IParameterized::setName().

m_pool

std::unique_ptr<ParameterPool> IParameterized::m_pool

privateinherited

parameter pool (kind of pointer-to-implementation)

Definition at line 73 of file IParameterized.h.

Referenced by IParameterized::createParameterTree(), IParameterized::parameter(), IParameterized::parameterPool(), IParameterized::registerParameter(), IParameterized::removeParameter(), and IParameterized::setParameterValue().

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The documentation for this class was generated from the following files:

• /home/www/ba/Core/Simulation/SpecularSimulation.h
• /home/www/ba/Core/Simulation/SpecularSimulation.cpp