BornAgain
1.18.0
Simulate and fit neutron and x-ray scattering at grazing incidence
|
Public Types | |
typedef double(* | cumulative_DF_1d) (double) |
Public Member Functions | |
ConvolutionDetectorResolution (cumulative_DF_1d res_function_1d) | |
ConvolutionDetectorResolution (const IResolutionFunction2D &p_res_function_2d) | |
virtual | ~ConvolutionDetectorResolution () |
virtual void | applyDetectorResolution (OutputData< double > *p_intensity_map) const |
virtual ConvolutionDetectorResolution * | clone () const |
void | accept (INodeVisitor *visitor) const final |
const IResolutionFunction2D * | getResolutionFunction2D () const |
std::vector< const INode * > | getChildren () const |
void | applyDetectorResolutionPol (OutputData< Eigen::Matrix2d > *p_matrix_intensity) const |
virtual void | transferToCPP () |
virtual std::string | treeToString () const |
void | registerChild (INode *node) |
virtual void | setParent (const INode *newParent) |
const INode * | parent () const |
INode * | parent () |
int | copyNumber (const INode *node) const |
std::string | displayName () const |
ParameterPool * | createParameterTree () const |
ParameterPool * | parameterPool () const |
std::string | parametersToString () const |
RealParameter & | registerParameter (const std::string &name, double *parpointer) |
void | registerVector (const std::string &base_name, kvector_t *p_vec, const std::string &units="nm") |
void | setParameterValue (const std::string &name, double value) |
void | setVectorValue (const std::string &base_name, kvector_t value) |
RealParameter * | parameter (const std::string &name) const |
virtual void | onChange () |
void | removeParameter (const std::string &name) |
void | removeVector (const std::string &base_name) |
void | setName (const std::string &name) |
const std::string & | getName () const |
Static Public Member Functions | |
static std::string | XComponentName (const std::string &base_name) |
static std::string | YComponentName (const std::string &base_name) |
static std::string | ZComponentName (const std::string &base_name) |
Protected Member Functions | |
ConvolutionDetectorResolution (const ConvolutionDetectorResolution &other) | |
Protected Attributes | |
const size_t | m_NP |
std::vector< double > | m_P |
Private Member Functions | |
void | setResolutionFunction (const IResolutionFunction2D &resFunc) |
void | apply1dConvolution (OutputData< double > *p_intensity_map) const |
void | apply2dConvolution (OutputData< double > *p_intensity_map) const |
double | getIntegratedPDF1d (double x, double step) const |
double | getIntegratedPDF2d (double x, double step_x, double y, double step_y) const |
Private Attributes | |
size_t | m_dimension |
cumulative_DF_1d | m_res_function_1d |
std::unique_ptr< IResolutionFunction2D > | mp_res_function_2d |
const INode * | m_parent {nullptr} |
std::string | m_name |
std::unique_ptr< ParameterPool > | m_pool |
Convolutes the intensity in 1 or 2 dimensions with a resolution function.
Limitation: this class assumes that the data points are evenly distributed on each axis
Definition at line 26 of file ConvolutionDetectorResolution.h.
typedef double(* ConvolutionDetectorResolution::cumulative_DF_1d) (double) |
Definition at line 29 of file ConvolutionDetectorResolution.h.
ConvolutionDetectorResolution::ConvolutionDetectorResolution | ( | cumulative_DF_1d | res_function_1d | ) |
Constructor taking a 1 dimensional resolution function as argument.
Definition at line 18 of file ConvolutionDetectorResolution.cpp.
References IParameterized::setName().
Referenced by clone().
ConvolutionDetectorResolution::ConvolutionDetectorResolution | ( | const IResolutionFunction2D & | p_res_function_2d | ) |
Constructor taking a 2 dimensional resolution function as argument.
Definition at line 24 of file ConvolutionDetectorResolution.cpp.
References IParameterized::setName(), and setResolutionFunction().
|
virtualdefault |
|
protected |
Definition at line 34 of file ConvolutionDetectorResolution.cpp.
References IParameterized::getName(), m_dimension, m_res_function_1d, mp_res_function_2d, IParameterized::setName(), and setResolutionFunction().
|
virtual |
Convolve given intensities with the encapsulated resolution.
Implements IDetectorResolution.
Definition at line 54 of file ConvolutionDetectorResolution.cpp.
References apply1dConvolution(), apply2dConvolution(), OutputData< T >::getRank(), and m_dimension.
|
virtual |
Implements IDetectorResolution.
Definition at line 44 of file ConvolutionDetectorResolution.cpp.
References ConvolutionDetectorResolution().
|
inlinefinalvirtual |
Calls the INodeVisitor's visit method.
Implements INode.
Definition at line 44 of file ConvolutionDetectorResolution.h.
|
inline |
Definition at line 65 of file ConvolutionDetectorResolution.h.
References mp_res_function_2d.
|
virtual |
Returns a vector of children (const).
Reimplemented from INode.
Definition at line 49 of file ConvolutionDetectorResolution.cpp.
References mp_res_function_2d.
|
private |
Definition at line 76 of file ConvolutionDetectorResolution.cpp.
References IResolutionFunction2D::clone(), mp_res_function_2d, and INode::registerChild().
Referenced by ConvolutionDetectorResolution().
|
private |
Definition at line 82 of file ConvolutionDetectorResolution.cpp.
References Convolve::fftconvolve(), OutputData< T >::getAxis(), getIntegratedPDF1d(), OutputData< T >::getRank(), OutputData< T >::getRawDataVector(), m_res_function_1d, OutputData< T >::setRawDataVector(), and IAxis::size().
Referenced by applyDetectorResolution().
|
private |
Definition at line 118 of file ConvolutionDetectorResolution.cpp.
References OutputData< T >::begin(), OutputData< T >::end(), Convolve::fftconvolve(), OutputData< T >::getAxis(), getIntegratedPDF2d(), OutputData< T >::getRank(), OutputData< T >::getRawDataVector(), mp_res_function_2d, and IAxis::size().
Referenced by applyDetectorResolution().
|
private |
Definition at line 182 of file ConvolutionDetectorResolution.cpp.
References ASSERT, and m_res_function_1d.
Referenced by apply1dConvolution().
|
private |
Definition at line 191 of file ConvolutionDetectorResolution.cpp.
References mp_res_function_2d.
Referenced by apply2dConvolution().
|
inherited |
Applies the detector resolution to the matrix-valued intensity data.
|
inlinevirtualinherited |
Used for Python overriding of clone (see swig/tweaks.py)
Definition at line 34 of file ICloneable.h.
|
virtualinherited |
Returns multiline string representing tree structure below the node.
Definition at line 53 of file INode.cpp.
References NodeUtils::nodeToString().
|
inherited |
Definition at line 58 of file INode.cpp.
References ASSERT, and INode::setParent().
Referenced by ParticleLayout::addAndRegisterAbstractParticle(), ParticleCoreShell::addAndRegisterCore(), MultiLayer::addAndRegisterInterface(), MultiLayer::addAndRegisterLayer(), ParticleCoreShell::addAndRegisterShell(), Layer::addLayout(), ParticleComposition::addParticlePointer(), Beam::Beam(), Crystal::Crystal(), IDetector::IDetector(), Simulation::initialize(), MesoCrystal::initialize(), Instrument::Instrument(), Beam::operator=(), Instrument::operator=(), Particle::Particle(), ParticleDistribution::ParticleDistribution(), IParticle::rotate(), ParticleLayout::setAndRegisterInterferenceFunction(), Simulation::setBackground(), InterferenceFunction1DLattice::setDecayFunction(), InterferenceFunction2DLattice::setDecayFunction(), Instrument::setDetector(), IDetector::setDetectorResolution(), Beam::setFootprintFactor(), Particle::setFormFactor(), InterferenceFunctionFinite3DLattice::setLattice(), InterferenceFunction2DLattice::setLattice(), InterferenceFunction2DParaCrystal::setLattice(), InterferenceFunction2DSuperLattice::setLattice(), InterferenceFunctionFinite2DLattice::setLattice(), InterferenceFunctionRadialParaCrystal::setProbabilityDistribution(), InterferenceFunction2DParaCrystal::setProbabilityDistributions(), setResolutionFunction(), IParticle::setRotation(), LayerInterface::setRoughness(), and InterferenceFunction2DSuperLattice::setSubstructureIFF().
|
virtualinherited |
Reimplemented in SampleProvider.
Definition at line 69 of file INode.cpp.
References INode::m_parent.
Referenced by INode::registerChild(), SampleProvider::setBuilder(), and SampleProvider::setParent().
|
inherited |
Definition at line 74 of file INode.cpp.
References INode::m_parent.
Referenced by INode::copyNumber(), INode::createParameterTree(), NodeUtils::nodePath(), Lattice2D::onChange(), SampleProvider::setBuilder(), SampleProvider::setParent(), and SampleProvider::setSample().
|
inherited |
|
inherited |
Returns copyNumber of child, which takes into account existence of children with same name.
Definition at line 84 of file INode.cpp.
References INode::getChildren(), IParameterized::getName(), and INode::parent().
Referenced by INode::displayName().
|
inherited |
Returns display name, composed from the name of node and it's copy number.
Definition at line 105 of file INode.cpp.
References INode::copyNumber(), IParameterized::getName(), and INode::m_parent.
Referenced by NodeUtils::nodePath(), and anonymous_namespace{NodeUtils.cpp}::nodeString().
|
virtualinherited |
Creates new parameter pool, with all local parameters and those of its children.
Reimplemented from IParameterized.
Definition at line 116 of file INode.cpp.
References ParameterPool::copyToExternalPool(), NodeIterator< Strategy >::first(), NodeIterator< Strategy >::getCurrent(), NodeIterator< Strategy >::isDone(), NodeIterator< Strategy >::next(), NodeUtils::nodePath(), IParameterized::parameterPool(), and INode::parent().
Referenced by ParticleDistribution::generateParticles(), Simulation::runSimulation(), DepthProbeSimulation::validateParametrization(), OffSpecSimulation::validateParametrization(), and SpecularSimulation::validateParametrization().
|
inlineinherited |
Returns pointer to the parameter pool.
Definition at line 38 of file IParameterized.h.
References IParameterized::m_pool.
Referenced by pyfmt2::argumentList(), SampleBuilderNode::borrow_builder_parameters(), INode::createParameterTree(), INode::INode(), IParameterized::IParameterized(), anonymous_namespace{NodeUtils.cpp}::poolToString(), SampleBuilderNode::reset(), and IDistribution1D::setUnits().
|
inherited |
Returns multiline string representing available parameters.
Definition at line 40 of file IParameterized.cpp.
References IParameterized::createParameterTree().
|
inherited |
Definition at line 48 of file IParameterized.cpp.
References IParameterized::getName(), IParameterized::m_pool, and IParameterized::onChange().
Referenced by BasicLattice::BasicLattice(), Beam::Beam(), CylindersInBABuilder::CylindersInBABuilder(), DetectionProperties::DetectionProperties(), HexagonalLattice::HexagonalLattice(), IInterferenceFunction::IInterferenceFunction(), INode::INode(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), Lattice2D::Lattice2D(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), ParticleDistribution::ParticleDistribution(), PlainMultiLayerBySLDBuilder::PlainMultiLayerBySLDBuilder(), IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParameterized::registerVector(), ParticleLayout::registerWeight(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), ResonatorBuilder::ResonatorBuilder(), Lattice2D::setRotationEnabled(), SquareLattice::SquareLattice(), and TriangularRippleBuilder::TriangularRippleBuilder().
|
inherited |
Definition at line 54 of file IParameterized.cpp.
References IParameterized::registerParameter(), RealParameter::setUnit(), IParameterized::XComponentName(), IParameterized::YComponentName(), and IParameterized::ZComponentName().
Referenced by Beam::Beam(), DetectionProperties::DetectionProperties(), InterferenceFunctionTwin::InterferenceFunctionTwin(), MultiLayer::MultiLayer(), Lattice::registerBasisVectors(), and IParticle::registerPosition().
|
inherited |
Definition at line 62 of file IParameterized.cpp.
References IParameterized::createParameterTree(), IParameterized::m_pool, and ParameterPool::setMatchedParametersValue().
Referenced by AsymRippleBuilder::buildSample(), and IParameterized::setVectorValue().
|
inherited |
Definition at line 75 of file IParameterized.cpp.
References IParameterized::setParameterValue(), BasicVector3D< T >::x(), IParameterized::XComponentName(), BasicVector3D< T >::y(), IParameterized::YComponentName(), BasicVector3D< T >::z(), and IParameterized::ZComponentName().
|
inherited |
Returns parameter with given 'name'.
Definition at line 83 of file IParameterized.cpp.
References IParameterized::m_pool.
Referenced by DepthProbeSimulation::initialize(), SpecularSimulation::initialize(), IParticle::registerAbundance(), Lattice::registerBasisVectors(), ParticleLayout::registerParticleDensity(), IParticle::registerPosition(), Layer::registerThickness(), Lattice2D::setRotationEnabled(), and DistributionLogNormal::setUnits().
|
inlinevirtualinherited |
Action to be taken in inherited class when a parameter has changed.
Reimplemented in IProfileRipple, FormFactorSphereLogNormalRadius, FormFactorSphereGaussianRadius, FormFactorGaussSphere, ISawtoothRipple, ICosineRipple, IProfileRectangularRipple, FormFactorTruncatedSpheroid, FormFactorTruncatedSphere, FormFactorTruncatedCube, FormFactorTetrahedron, FormFactorPyramid, FormFactorPrism6, FormFactorPrism3, FormFactorLongBoxLorentz, FormFactorLongBoxGauss, FormFactorIcosahedron, FormFactorHollowSphere, FormFactorHemiEllipsoid, FormFactorFullSpheroid, FormFactorFullSphere, FormFactorEllipsoidalCylinder, FormFactorDodecahedron, FormFactorCylinder, FormFactorCuboctahedron, FormFactorCone6, FormFactorCone, FormFactorCantellatedCube, FormFactorBox, FormFactorAnisoPyramid, InterferenceFunction3DLattice, InterferenceFunction2DLattice, Lattice, and Lattice2D.
Definition at line 58 of file IParameterized.h.
Referenced by Lattice2D::onChange(), and IParameterized::registerParameter().
|
inherited |
Definition at line 88 of file IParameterized.cpp.
References IParameterized::m_pool.
Referenced by IParticle::registerAbundance(), ParticleLayout::registerParticleDensity(), Layer::registerThickness(), IParameterized::removeVector(), and Lattice2D::setRotationEnabled().
|
inherited |
Definition at line 93 of file IParameterized.cpp.
References IParameterized::removeParameter(), IParameterized::XComponentName(), IParameterized::YComponentName(), and IParameterized::ZComponentName().
Referenced by IParticle::registerPosition().
|
staticinherited |
Definition at line 100 of file IParameterized.cpp.
Referenced by Lattice::registerBasisVectors(), IParticle::registerPosition(), IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().
|
staticinherited |
Definition at line 105 of file IParameterized.cpp.
Referenced by IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().
|
staticinherited |
Definition at line 110 of file IParameterized.cpp.
Referenced by IParameterized::registerVector(), IParameterized::removeVector(), and IParameterized::setVectorValue().
|
inlineinherited |
Definition at line 68 of file IParameterized.h.
References IParameterized::m_name.
Referenced by BasicLattice::BasicLattice(), Beam::Beam(), Layer::clone(), ConvolutionDetectorResolution(), LayersWithAbsorptionBuilder::createSampleByIndex(), Basic2DParaCrystalBuilder::createSampleByIndex(), ParticleInVacuumBuilder::createSampleByIndex(), SimpleMagneticRotationBuilder::createSampleByIndex(), Crystal::Crystal(), DetectionProperties::DetectionProperties(), DistributionHandler::DistributionHandler(), FormFactorBAPol::FormFactorBAPol(), FormFactorCoreShell::FormFactorCoreShell(), FormFactorCrystal::FormFactorCrystal(), FormFactorDecoratorMaterial::FormFactorDecoratorMaterial(), FormFactorDecoratorPositionFactor::FormFactorDecoratorPositionFactor(), FormFactorDecoratorRotation::FormFactorDecoratorRotation(), FormFactorDWBA::FormFactorDWBA(), FormFactorDWBAPol::FormFactorDWBAPol(), FormFactorWeighted::FormFactorWeighted(), HexagonalLattice::HexagonalLattice(), IDetector::IDetector(), DepthProbeSimulation::initialize(), GISASSimulation::initialize(), OffSpecSimulation::initialize(), SpecularSimulation::initialize(), SpecularDetector1D::initialize(), MesoCrystal::initialize(), Particle::initialize(), ParticleComposition::initialize(), INode::INode(), Instrument::Instrument(), InterferenceFunction1DLattice::InterferenceFunction1DLattice(), InterferenceFunction2DLattice::InterferenceFunction2DLattice(), InterferenceFunction2DParaCrystal::InterferenceFunction2DParaCrystal(), InterferenceFunction2DSuperLattice::InterferenceFunction2DSuperLattice(), InterferenceFunction3DLattice::InterferenceFunction3DLattice(), InterferenceFunctionFinite2DLattice::InterferenceFunctionFinite2DLattice(), InterferenceFunctionFinite3DLattice::InterferenceFunctionFinite3DLattice(), InterferenceFunctionHardDisk::InterferenceFunctionHardDisk(), InterferenceFunctionNone::InterferenceFunctionNone(), InterferenceFunctionRadialParaCrystal::InterferenceFunctionRadialParaCrystal(), InterferenceFunctionTwin::InterferenceFunctionTwin(), ISampleBuilder::ISampleBuilder(), IsGISAXSDetector::IsGISAXSDetector(), Lattice::Lattice(), Layer::Layer(), LayerInterface::LayerInterface(), LayerRoughness::LayerRoughness(), MultiLayer::MultiLayer(), Beam::operator=(), SampleBuilderNode::operator=(), ParticleCoreShell::ParticleCoreShell(), ParticleDistribution::ParticleDistribution(), ParticleLayout::ParticleLayout(), RectangularDetector::RectangularDetector(), SampleBuilderNode::reset(), ResolutionFunction2DGaussian::ResolutionFunction2DGaussian(), SampleBuilderNode::SampleBuilderNode(), SampleBuilderNode::setSBN(), SphericalDetector::SphericalDetector(), and SquareLattice::SquareLattice().
|
inlineinherited |
Definition at line 69 of file IParameterized.h.
References IParameterized::m_name.
Referenced by Beam::Beam(), Layer::clone(), IFormFactorBorn::computeSlicingEffects(), ConvolutionDetectorResolution(), INode::copyNumber(), IParameterized::createParameterTree(), IFormFactor::createSlicedFormFactor(), SampleToPython::defineFormFactors(), SampleToPython::defineInterferenceFunctions(), INode::displayName(), IDetector::IDetector(), Instrument::Instrument(), IParameterized::IParameterized(), Beam::operator=(), SampleBuilderNode::operator=(), anonymous_namespace{ParticleLayout.cpp}::particleDensityIsProvidedByInterference(), IParameterized::registerParameter(), SampleBuilderNode::SampleBuilderNode(), and IFormFactor::sliceFormFactor().
|
private |
Definition at line 60 of file ConvolutionDetectorResolution.h.
Referenced by applyDetectorResolution(), and ConvolutionDetectorResolution().
|
private |
Definition at line 61 of file ConvolutionDetectorResolution.h.
Referenced by apply1dConvolution(), ConvolutionDetectorResolution(), and getIntegratedPDF1d().
|
private |
Definition at line 62 of file ConvolutionDetectorResolution.h.
Referenced by apply2dConvolution(), ConvolutionDetectorResolution(), getChildren(), getIntegratedPDF2d(), getResolutionFunction2D(), and setResolutionFunction().
|
privateinherited |
Definition at line 81 of file INode.h.
Referenced by INode::displayName(), INode::parent(), and INode::setParent().
|
protectedinherited |
Definition at line 86 of file INode.h.
Referenced by INode::INode().
|
protectedinherited |
Definition at line 87 of file INode.h.
Referenced by INode::INode(), and IFootprintFactor::setWidthRatio().
|
privateinherited |
Definition at line 72 of file IParameterized.h.
Referenced by IParameterized::getName(), and IParameterized::setName().
|
privateinherited |
parameter pool (kind of pointer-to-implementation)
Definition at line 73 of file IParameterized.h.
Referenced by IParameterized::createParameterTree(), IParameterized::parameter(), IParameterized::parameterPool(), IParameterized::registerParameter(), IParameterized::removeParameter(), and IParameterized::setParameterValue().