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#!/usr/bin/env python3
"""
Cylinders of two different sizes in Decoupling Approximation
"""
import bornagain as ba
from bornagain import ba_plot as bp, deg, nm
def get_sample():
    """
    Returns a sample with cylinders of two different sizes on a substrate.
    The cylinder positions are modelled in Decoupling Approximation.
    """
    # Define materials
    material_Particle = ba.RefractiveMaterial("Particle", 0.0006, 2e-08)
    material_Substrate = ba.RefractiveMaterial("Substrate", 6e-06, 2e-08)
    material_Vacuum = ba.RefractiveMaterial("Vacuum", 0, 0)
    # Define form factors
    ff_1 = ba.Cylinder(5*nm, 5*nm)
    ff_2 = ba.Cylinder(8*nm, 8*nm)
    # Define particles
    particle_1 = ba.Particle(material_Particle, ff_1)
    particle_2 = ba.Particle(material_Particle, ff_2)
    # Define interference functions
    iff = ba.InterferenceRadialParacrystal(18*nm, 1000*nm)
    iff_pdf = ba.Profile1DGauss(3*nm)
    iff.setProbabilityDistribution(iff_pdf)
    # Define particle layouts
    layout = ba.ParticleLayout()
    layout.addParticle(particle_1, 0.8)
    layout.addParticle(particle_2, 0.2)
    layout.setInterference(iff)
    layout.setTotalParticleSurfaceDensity(0.01)
    # Define layers
    layer_1 = ba.Layer(material_Vacuum)
    layer_1.addLayout(layout)
    layer_2 = ba.Layer(material_Substrate)
    # Define sample
    sample = ba.MultiLayer()
    sample.addLayer(layer_1)
    sample.addLayer(layer_2)
    return sample
def get_simulation(sample):
    beam = ba.Beam(1e9, 0.1*nm, 0.2*deg)
    detector = ba.SphericalDetector(bp.simargs['n'], 2*deg, 1*deg, 1*deg)
    simulation = ba.ScatteringSimulation(beam, sample, detector)
    return simulation
if __name__ == '__main__':
    bp.parse_args(sim_n=200)
    sample = get_sample()
    simulation = get_simulation(sample)
    result = simulation.simulate()
    bp.plot_simulation_result(result)
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